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Rnp4F RNA-binding protein 4F [ Bombyx mori (domestic silkworm) ]

Gene ID: 101735655, updated on 22-May-2024

Summary

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Gene symbol
Rnp4F
Gene description
RNA-binding protein 4F
Gene type
protein coding
RefSeq status
MODEL
Organism
Bombyx mori
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx
Orthologs
fruit fly all
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Genomic context

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Location:
chromosome: 16
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_01 current ASM3026992v2 (GCF_030269925.1) 16 NC_085122.1 (6463119..6478521, complement)
103 previous assembly Bmori_2016v1.0 (GCF_014905235.1) 16 NC_051373.1 (6376671..6392057, complement)

Chromosome 16 - NC_085122.1Genomic Context describing neighboring genes Neighboring gene Bm8 interacting protein 2d-4 Neighboring gene protein ABHD18 Neighboring gene septin Neighboring gene cell cycle control protein 50A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptomic analysis of developmental features of Bombyx mori wing disc during metamorphosis. Ou J, et al. BMC Genomics, 2014 Sep 27. PMID 25261999, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ASAP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
squamous cell carcinoma antigen recognized by T-cells 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030269925.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3026992v2 Primary Assembly

Genomic

  1. NC_085122.1 Reference ASM3026992v2 Primary Assembly

    Range
    6463119..6478521 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004928820.5 → XP_004928877.1  squamous cell carcinoma antigen recognized by T-cells 3

    UniProtKB/TrEMBL
    A0A8R2ANX3
    Conserved Domains (3) summary
    COG0724
    Location:537 → 801
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    COG5107
    Location:271 → 599
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
    cl17169
    Location:741 → 819
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
Heading Accession and Version

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