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Slc1a6 solute carrier family 1 member 6 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101718705, updated on 8-Mar-2024

Summary

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Gene symbol
Slc1a6
Gene description
solute carrier family 1 member 6
Locus tag
GW7_16029
See related
Ensembl:ENSHGLG00000007719
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624901.1 (2021097..2048456, complement)

NW_004624901.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor 7C2 Neighboring gene selenocysteine insertion sequence-binding protein 2 pseudogene Neighboring gene tektin like 1 Neighboring gene serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624901 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Kim EB, et al. Nature, 2011 Oct 12. PMID 21993625, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-glutamate transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glutamate:sodium symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables neutral L-amino acid transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-glutamate transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
excitatory amino acid transporter 4
Names
Excitatory amino acid transporter 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624901.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    2021097..2048456 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013068413.2 → XP_012923867.1  excitatory amino acid transporter 4 isoform X2

    Conserved Domains (1) summary
    pfam00375
    Location:58 → 477
    SDF; Sodium:dicarboxylate symporter family

  2. XM_021250373.1 → XP_021106032.1  excitatory amino acid transporter 4 isoform X1

    UniProtKB/TrEMBL
    G5BYQ9
    Related
    ENSHGLP00000010760.1, ENSHGLT00000010882.1
    Conserved Domains (1) summary
    pfam00375
    Location:58 → 522
    SDF; Sodium:dicarboxylate symporter family

  3. XM_021250371.1 → XP_021106030.1  excitatory amino acid transporter 4 isoform X1

    UniProtKB/TrEMBL
    G5BYQ9
    Conserved Domains (1) summary
    pfam00375
    Location:58 → 522
    SDF; Sodium:dicarboxylate symporter family

  4. XM_004872510.3 → XP_004872567.1  excitatory amino acid transporter 4 isoform X1

    See identical proteins and their annotated locations for XP_004872567.1

    UniProtKB/TrEMBL
    G5BYQ9
    Conserved Domains (1) summary
    pfam00375
    Location:58 → 522
    SDF; Sodium:dicarboxylate symporter family

  5. XM_004872513.3 → XP_004872570.1  excitatory amino acid transporter 4 isoform X3

    Conserved Domains (1) summary
    pfam00375
    Location:15 → 422
    SDF; Sodium:dicarboxylate symporter family

RNA

  1. XR_002391648.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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