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Aff2 ALF transcription elongation factor 2 [ Octodon degus (degu) ]

Gene ID: 101572496, updated on 8-Mar-2024

Summary

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Gene symbol
Aff2
Gene description
ALF transcription elongation factor 2
See related
Ensembl:ENSODEG00000009737
Gene type
protein coding
RefSeq status
MODEL
Organism
Octodon degus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Octodontidae; Octodon
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
102 current OctDeg1.0 (GCF_000260255.1) Unplaced Scaffold NW_004524757.1 (2283039..2829174)

NW_004524757.1Genomic Context describing neighboring genes Neighboring gene spermatogenesis-associated protein 7 pseudogene Neighboring gene U6atac minor spliceosomal RNA Neighboring gene 39S ribosomal protein L48, mitochondrial pseudogene Neighboring gene small nuclear ribonucleoprotein Sm D1 pseudogene Neighboring gene S-formylglutathione hydrolase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004524757 Unplaced Scaffold Reference OctDeg1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables G-quadruplex RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear speck IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AF4/FMR2 family member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Octodon degus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OctDeg1.0 Primary Assembly

Genomic

  1. NW_004524757.1 Reference OctDeg1.0 Primary Assembly

    Range
    2283039..2829174
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023703816.1 → XP_023559584.1  AF4/FMR2 family member 2 isoform X1

    UniProtKB/TrEMBL
    A0A6P6DHR6
    Related
    ENSODEP00000013151.1, ENSODET00000013327.1
    Conserved Domains (1) summary
    pfam05110
    Location:19 → 1282
    AF-4; AF-4 proto-oncoprotein

  2. XM_023703817.1 → XP_023559585.1  AF4/FMR2 family member 2 isoform X2

    UniProtKB/TrEMBL
    A0A6P6DHT1
    Conserved Domains (1) summary
    pfam05110
    Location:19 → 1278
    AF-4; AF-4 proto-oncoprotein

  3. XM_023703818.1 → XP_023559586.1  AF4/FMR2 family member 2 isoform X3

    UniProtKB/TrEMBL
    A0A6P6DHV9
    Conserved Domains (1) summary
    pfam05110
    Location:1 → 1202
    AF-4; AF-4 proto-oncoprotein
Nucleotide Protein
Heading Accession and Version

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