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LOC101507535 DEAD-box ATP-dependent RNA helicase 20 [ Cicer arietinum (chickpea) ]

Gene ID: 101507535, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101507535
Gene description
DEAD-box ATP-dependent RNA helicase 20
Gene type
protein coding
RefSeq status
MODEL
Organism
Cicer arietinum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Cicereae; Cicer
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Genomic context

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Location:
chromosome: Ca1
Exon count:
10
Annotation release Status Assembly Chr Location
102 current ASM33114v1 (GCF_000331145.1) Ca1 NC_021160.1 (10297366..10303166, complement)

Chromosome Ca1 - NC_021160.1Genomic Context describing neighboring genes Neighboring gene phospholipase D alpha 4 Neighboring gene protein FLX-like 3 Neighboring gene mediator of RNA polymerase II transcription subunit 30-like Neighboring gene mini-ribonuclease 3 Neighboring gene putative pentatricopeptide repeat-containing protein At5g43820 Neighboring gene transfer RNA lysine (anticodon CUU)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_021160.1 Chromosome Ca1 Reference ASM33114v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DEAD-box ATP-dependent RNA helicase 20

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cicer arietinum Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM33114v1 Primary Assembly

Genomic

  1. NC_021160.1 Reference ASM33114v1 Primary Assembly

    Range
    10297366..10303166 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004486764.3 → XP_004486821.1  DEAD-box ATP-dependent RNA helicase 20

    UniProtKB/TrEMBL
    A0A1S2XBK1
    Conserved Domains (3) summary
    PRK04837
    Location:97 → 499
    PRK04837; ATP-dependent RNA helicase RhlB; Provisional
    cd00079
    Location:316 → 445
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cd00268
    Location:99 → 303
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
Nucleotide Protein
Heading Accession and Version

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