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pdlim2 PDZ and LIM domain 2 (mystique) [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101487038, updated on 8-Mar-2024

Summary

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Gene symbol
pdlim2
Gene description
PDZ and LIM domain 2 (mystique)
See related
Ensembl:ENSMZEG00005011631
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: LG12
Exon count:
12
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG12 NC_036791.1 (12637952..12670140)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531720.1 (4023953..4056177)

Linkage Group LG12 - NC_036791.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase NEURL3-like Neighboring gene sorbin and SH3 domain containing 3 Neighboring gene adhesion G protein-coupled receptor A2 Neighboring gene RAB11 family interacting protein 1 (class I) a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables muscle alpha-actinin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in muscle structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of filamentous actin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PDZ and LIM domain protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036791.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    12637952..12670140
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004544286.5 → XP_004544343.1  PDZ and LIM domain protein 2

    See identical proteins and their annotated locations for XP_004544343.1

    UniProtKB/TrEMBL
    A0A3P9BZV4
    Conserved Domains (4) summary
    cd09449
    Location:292 → 344
    LIM_Mystique; The LIM domain of Mystique, a subfamily of ALP LIM domain proteins
    cd00992
    Location:4 → 81
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:182 → 262
    DUF4749; Domain of unknown function (DUF4749)
    cl28339
    Location:29 → 149
    DegQ; Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

  2. XM_012917227.4 → XP_012772681.1  PDZ and LIM domain protein 2

    See identical proteins and their annotated locations for XP_012772681.1

    UniProtKB/TrEMBL
    A0A3P9BZV4
    Related
    ENSMZEP00005015521.1, ENSMZET00005016021.1
    Conserved Domains (4) summary
    cd09449
    Location:292 → 344
    LIM_Mystique; The LIM domain of Mystique, a subfamily of ALP LIM domain proteins
    cd00992
    Location:4 → 81
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:182 → 262
    DUF4749; Domain of unknown function (DUF4749)
    cl28339
    Location:29 → 149
    DegQ; Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

  3. XM_004544285.5 → XP_004544342.1  PDZ and LIM domain protein 2

    See identical proteins and their annotated locations for XP_004544342.1

    UniProtKB/TrEMBL
    A0A3P9BZV4
    Related
    ENSMZEP00005015508.1, ENSMZET00005016008.1
    Conserved Domains (4) summary
    cd09449
    Location:292 → 344
    LIM_Mystique; The LIM domain of Mystique, a subfamily of ALP LIM domain proteins
    cd00992
    Location:4 → 81
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:182 → 262
    DUF4749; Domain of unknown function (DUF4749)
    cl28339
    Location:29 → 149
    DegQ; Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

  4. XM_004544284.5 → XP_004544341.1  PDZ and LIM domain protein 2

    See identical proteins and their annotated locations for XP_004544341.1

    UniProtKB/TrEMBL
    A0A3P9BZV4
    Related
    ENSMZEP00005015519.1, ENSMZET00005016019.1
    Conserved Domains (4) summary
    cd09449
    Location:292 → 344
    LIM_Mystique; The LIM domain of Mystique, a subfamily of ALP LIM domain proteins
    cd00992
    Location:4 → 81
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:182 → 262
    DUF4749; Domain of unknown function (DUF4749)
    cl28339
    Location:29 → 149
    DegQ; Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
Heading Accession and Version

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