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ITGA10 integrin subunit alpha 10 [ Trichechus manatus latirostris (Florida manatee) ]

Gene ID: 101352987, updated on 8-Mar-2024

Summary

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Gene symbol
ITGA10
Gene description
integrin subunit alpha 10
See related
EnsemblRapid:ENSTMLG00000015391
Gene type
protein coding
RefSeq status
MODEL
Organism
Trichechus manatus latirostris (sub-species: latirostris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Sirenia; Trichechidae; Trichechus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
RS_2024_01 current TriManLat1.0 (GCF_000243295.1) Unplaced Scaffold NW_004444009.1 (326923..342714)

NW_004444009.1Genomic Context describing neighboring genes Neighboring gene putative gonadotropin-releasing hormone II receptor Neighboring gene peroxisomal biogenesis factor 11 beta Neighboring gene ankyrin repeat domain 35 Neighboring gene protein inhibitor of activated STAT 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004444009 Unplaced Scaffold Reference TriManLat1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion mediated by integrin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of integrin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integrin alpha-10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000243295.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TriManLat1.0 Primary Assembly

Genomic

  1. NW_004444009.1 Reference TriManLat1.0 Primary Assembly

    Range
    326923..342714
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004380319.3 → XP_004380376.1  integrin alpha-10 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9DTM9
    Related
    ENSTMLP00000021768.1, ENSTMLT00000023337.1
    Conserved Domains (3) summary
    smart00191
    Location:545 → 599
    Int_alpha; Integrin alpha (beta-propellor repeats)
    cd01469
    Location:166 → 346
    vWA_integrins_alpha_subunit; Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta ...
    pfam08441
    Location:642 → 1050
    Integrin_alpha2; Integrin alpha

  2. XM_012556663.2 → XP_012412117.1  integrin alpha-10 isoform X2

    UniProtKB/TrEMBL
    A0A2Y9FY51
    Conserved Domains (3) summary
    smart00191
    Location:414 → 468
    Int_alpha; Integrin alpha (beta-propellor repeats)
    cd01469
    Location:35 → 215
    vWA_integrins_alpha_subunit; Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta ...
    pfam08441
    Location:511 → 919
    Integrin_alpha2; Integrin alpha

  3. XM_012556664.2 → XP_012412118.1  integrin alpha-10 isoform X3

    UniProtKB/TrEMBL
    A0A2Y9FY43
    Related
    ENSTMLP00000021794.1, ENSTMLT00000023363.1
    Conserved Domains (3) summary
    smart00191
    Location:402 → 456
    Int_alpha; Integrin alpha (beta-propellor repeats)
    cd01469
    Location:23 → 203
    vWA_integrins_alpha_subunit; Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta ...
    pfam08441
    Location:499 → 907
    Integrin_alpha2; Integrin alpha
Nucleotide Protein
Heading Accession and Version

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