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LOC101174660 cytosolic 10-formyltetrahydrofolate dehydrogenase [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101174660, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101174660
Gene description
cytosolic 10-formyltetrahydrofolate dehydrogenase
See related
EnsemblRapid:ENSORLG00000009492
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
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Genomic context

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Location:
chromosome: 5
Exon count:
23
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 5 NC_019863.2 (18211359..18224911, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 5 NC_019863.1 (17232757..17246313, complement)

Chromosome 5 - NC_019863.2Genomic Context describing neighboring genes Neighboring gene protein FAM217B Neighboring gene p53 and DNA-damage regulated 1 Neighboring gene zinc finger protein ZXDC Neighboring gene regulating synaptic membrane exocytosis 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables aldehyde dehydrogenase (NAD+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables formyltetrahydrofolate dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in 10-formyltetrahydrofolate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in one-carbon metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytosolic 10-formyltetrahydrofolate dehydrogenase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019863.2 Reference ASM223467v1 Primary Assembly

    Range
    18211359..18224911 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004068898.4 → XP_004068946.1  cytosolic 10-formyltetrahydrofolate dehydrogenase

    UniProtKB/TrEMBL
    A0A3P9KDJ0, H2M0H9
    Related
    ENSORLP00000011903.2, ENSORLT00000011904.3
    Conserved Domains (4) summary
    cd07140
    Location:417 → 902
    ALDH_F1L_FTFDH; 10-formyltetrahydrofolate dehydrogenase, ALDH family 1L
    cd08647
    Location:1 → 203
    FMT_core_FDH_N; 10-formyltetrahydrofolate dehydrogenase (FDH), N-terminal hydrolase domain
    cd08703
    Location:206 → 306
    FDH_Hydrolase_C; The C-terminal subdomain of the hydrolase domain on the bi-functional protein 10-formyltetrahydrofolate dehydrogenase
    COG0223
    Location:1 → 305
    Fmt; Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version

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