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eloca elongin C paralog a [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101173584, updated on 8-Mar-2024

Summary

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Gene symbol
eloca
Gene description
elongin C paralog a
See related
EnsemblRapid:ENSORLG00000021811
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
eloc; tceb1
Orthologs
human zebrafish all
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Genomic context

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See eloca in Genome Data Viewer
Location:
chromosome: 20
Exon count:
4
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 20 NC_019878.2 (16085009..16087629)
102 previous assembly ASM31367v1 (GCF_000313675.1) 20 NC_019878.1 (14303644..14306267)

Chromosome 20 - NC_019878.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111946660 Neighboring gene ganglioside induced differentiation associated protein 1 Neighboring gene junctophilin 1a Neighboring gene ubiquitin conjugating enzyme E2 Wb Neighboring gene staufen double-stranded RNA binding protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-macromolecule adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of elongin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
elongin-C
Names
transcription elongation factor B subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019878.2 Reference ASM223467v1 Primary Assembly

    Range
    16085009..16087629
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004081021.4 → XP_004081069.1  elongin-C

    UniProtKB/TrEMBL
    A0A3B3HAL1, A0A3P9L4P8
    Related
    ENSORLP00000028959.1, ENSORLT00000028785.2
    Conserved Domains (1) summary
    cd18321
    Location:18 → 112
    BTB_POZ_EloC; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Elongin-C (EloC) and similar proteins
Nucleotide Protein
Heading Accession and Version

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