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bud13 BUD13 homolog [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101171429, updated on 8-Mar-2024

Summary

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Gene symbol
bud13
Gene description
BUD13 homolog
See related
EnsemblRapid:ENSORLG00000005682
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 14
Exon count:
10
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 14 NC_019872.2 (13067843..13072838, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 14 NC_019872.1 (13987505..13992716, complement)

Chromosome 14 - NC_019872.2Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 42a Neighboring gene small nuclear ribonucleoprotein 35 (U11/U12) Neighboring gene uncharacterized LOC101171185 Neighboring gene nectin cell adhesion molecule 1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RES complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
BUD13 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019872.2 Reference ASM223467v1 Primary Assembly

    Range
    13067843..13072838 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004076379.4 → XP_004076427.1  BUD13 homolog

    UniProtKB/TrEMBL
    A0A3P9I0J5, H2LM73
    Related
    ENSORLP00000007143.2, ENSORLT00000007144.3
    Conserved Domains (1) summary
    pfam09736
    Location:381 → 521
    Bud13; Pre-mRNA-splicing factor of RES complex
Nucleotide Protein
Heading Accession and Version

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