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amy2a amylase alpha 2A [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101163630, updated on 8-Mar-2024

Summary

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Gene symbol
amy2a
Gene description
amylase alpha 2A
See related
EnsemblRapid:ENSORLG00000020006
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 17
Exon count:
9
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 17 NC_019875.2 (31193777..31196915, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) Unplaced Scaffold NW_004090078.1 (27921..31157)

Chromosome 17 - NC_019875.2Genomic Context describing neighboring genes Neighboring gene guanine nucleotide exchange factor VAV3-like Neighboring gene netrin-G1 Neighboring gene uncharacterized LOC105357968 Neighboring gene collagen alpha-1(XI) chain-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-amylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cation binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pancreatic alpha-amylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019875.2 Reference ASM223467v1 Primary Assembly

    Range
    31193777..31196915 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004085067.4 → XP_004085115.1  pancreatic alpha-amylase

    UniProtKB/Swiss-Prot
    H2N0D4
    UniProtKB/TrEMBL
    A0A3P9H380
    Related
    ENSORLP00000051550.1, ENSORLT00000103336.1
    Conserved Domains (2) summary
    cd11317
    Location:25 → 417
    AmyAc_bac_euk_AmyA; Alpha amylase catalytic domain found in bacterial and eukaryotic Alpha amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)
    smart00632
    Location:423 → 511
    Aamy_C; Aamy_C domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
H2N0D4.1 GenPept UniProtKB/Swiss-Prot:H2N0D4

Gene LinkOut

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