U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

srrm2 serine/arginine repetitive matrix 2 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101162294, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
srrm2
Gene description
serine/arginine repetitive matrix 2
See related
EnsemblRapid:ENSORLG00000001078
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 8
Exon count:
15
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 8 NC_019866.2 (2359703..2370181)
102 previous assembly ASM31367v1 (GCF_000313675.1) 8 NC_019866.1 (1915645..1926578)

Chromosome 8 - NC_019866.2Genomic Context describing neighboring genes Neighboring gene NACHT, LRR and PYD domains-containing protein 12 Neighboring gene ADP-ribosylation factor-like 6 interacting protein 1 Neighboring gene ras-related protein Rab-35 Neighboring gene anaphase promoting complex subunit 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

General protein information

Go to the top of the page Help
Preferred Names
serine/arginine repetitive matrix protein 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019866.2 Reference ASM223467v1 Primary Assembly

    Range
    2359703..2370181
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020705024.2 → XP_020560683.1  serine/arginine repetitive matrix protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A3B3IHN2, H2L688
    Conserved Domains (3) summary
    pfam08312
    Location:61 → 103
    cwf21; cwf21 domain
    cl26464
    Location:950 → 1121
    Atrophin-1; Atrophin-1 family
    cl26511
    Location:286 → 733
    Neuromodulin_N; Gap junction protein N-terminal region

  2. XM_011477743.3 → XP_011476045.1  serine/arginine repetitive matrix protein 2 isoform X1

    See identical proteins and their annotated locations for XP_011476045.1

    UniProtKB/TrEMBL
    A0A3B3IHN2, H2L688
    Related
    ENSORLP00000043421.2, ENSORLT00000030740.2
    Conserved Domains (3) summary
    pfam08312
    Location:61 → 103
    cwf21; cwf21 domain
    cl26464
    Location:950 → 1121
    Atrophin-1; Atrophin-1 family
    cl26511
    Location:286 → 733
    Neuromodulin_N; Gap junction protein N-terminal region

  3. XM_020705025.2 → XP_020560684.1  serine/arginine repetitive matrix protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A3B3IHN2, H2L688
    Conserved Domains (3) summary
    pfam08312
    Location:61 → 103
    cwf21; cwf21 domain
    cl26464
    Location:950 → 1121
    Atrophin-1; Atrophin-1 family
    cl26511
    Location:286 → 733
    Neuromodulin_N; Gap junction protein N-terminal region

  4. XM_011477744.3 → XP_011476046.1  serine/arginine repetitive matrix protein 2 isoform X1

    See identical proteins and their annotated locations for XP_011476046.1

    UniProtKB/TrEMBL
    A0A3B3IHN2, H2L688
    Related
    ENSORLP00000047944.1, ENSORLT00000082499.1
    Conserved Domains (3) summary
    pfam08312
    Location:61 → 103
    cwf21; cwf21 domain
    cl26464
    Location:950 → 1121
    Atrophin-1; Atrophin-1 family
    cl26511
    Location:286 → 733
    Neuromodulin_N; Gap junction protein N-terminal region

  5. XM_011477745.2 → XP_011476047.1  serine/arginine repetitive matrix protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A3B3IHN2
    Conserved Domains (1) summary
    pfam08312
    Location:61 → 103
    cwf21; cwf21 domain

  6. XM_011477747.2 → XP_011476049.1  serine/arginine repetitive matrix protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A3B3IHN2
    Conserved Domains (3) summary
    pfam08312
    Location:61 → 103
    cwf21; cwf21 domain
    cl26464
    Location:939 → 1110
    Atrophin-1; Atrophin-1 family
    cl26511
    Location:288 → 722
    Neuromodulin_N; Gap junction protein N-terminal region

  7. XM_011477746.2 → XP_011476048.1  serine/arginine repetitive matrix protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A3B3IHN2
    Related
    ENSORLP00000001332.3, ENSORLT00000001333.3
    Conserved Domains (1) summary
    pfam08312
    Location:61 → 103
    cwf21; cwf21 domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.