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LOC101159455 claudin-4 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101159455, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101159455
Gene description
claudin-4
See related
EnsemblRapid:ENSORLG00000001319
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
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Genomic context

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Location:
chromosome: 13
Exon count:
1
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 13 NC_019871.2 (3360443..3363573, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 13 NC_019871.1 (2354167..2357297, complement)

Chromosome 13 - NC_019871.2Genomic Context describing neighboring genes Neighboring gene THAP domain-containing protein 5 Neighboring gene claudin-3 Neighboring gene claudin-4-like Neighboring gene claudin-4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in bicellular tight junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
claudin-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019871.2 Reference ASM223467v1 Primary Assembly

    Range
    3360443..3363573 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020708034.1 → XP_020563693.1  claudin-4

    Related
    ENSORLP00000001625.3, ENSORLT00000001626.3
    Conserved Domains (1) summary
    cl21598
    Location:45 → 221
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases
Research Materials