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ighmbp2 immunoglobulin mu DNA binding protein 2 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101158519, updated on 8-Mar-2024

Summary

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Gene symbol
ighmbp2
Gene description
immunoglobulin mu DNA binding protein 2
See related
EnsemblRapid:ENSORLG00000006561
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 6
Exon count:
16
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 6 NC_019864.2 (16103770..16110849)
102 previous assembly ASM31367v1 (GCF_000313675.1) 6 NC_019864.1 (10854726..10861822)

Chromosome 6 - NC_019864.2Genomic Context describing neighboring genes Neighboring gene CD151 molecule Neighboring gene glutamine amidotransferase class 1 domain containing 1 Neighboring gene chitinase domain containing 1 Neighboring gene zinc-binding protein A33-like Neighboring gene receptor-associated protein of the synapse, 43kD Neighboring gene kelch repeat and BTB (POZ) domain containing 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5'-3' DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-binding protein SMUBP-2
Names
immunoglobulin mu binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019864.2 Reference ASM223467v1 Primary Assembly

    Range
    16103770..16110849
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011476073.3 → XP_011474375.1  DNA-binding protein SMUBP-2

    See identical proteins and their annotated locations for XP_011474375.1

    UniProtKB/TrEMBL
    A0A3P9KGY0, H2LQ96
    Related
    ENSORLP00000008235.3, ENSORLT00000008236.3
    Conserved Domains (5) summary
    cd02641
    Location:708 → 767
    R3H_Smubp-2_like; R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most ...
    TIGR00376
    Location:25 → 637
    TIGR00376; DNA helicase, putative
    pfam01428
    Location:882 → 918
    zf-AN1; AN1-like Zinc finger
    pfam13087
    Location:414 → 609
    AAA_12; AAA domain
    pfam13245
    Location:196 → 254
    AAA_19; Part of AAA domain

  2. XM_011476072.3 → XP_011474374.1  DNA-binding protein SMUBP-2

    See identical proteins and their annotated locations for XP_011474374.1

    UniProtKB/TrEMBL
    A0A3P9KGY0, H2LQ96
    Conserved Domains (5) summary
    cd02641
    Location:708 → 767
    R3H_Smubp-2_like; R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most ...
    TIGR00376
    Location:25 → 637
    TIGR00376; DNA helicase, putative
    pfam01428
    Location:882 → 918
    zf-AN1; AN1-like Zinc finger
    pfam13087
    Location:414 → 609
    AAA_12; AAA domain
    pfam13245
    Location:196 → 254
    AAA_19; Part of AAA domain

  3. XM_011476071.3 → XP_011474373.1  DNA-binding protein SMUBP-2

    See identical proteins and their annotated locations for XP_011474373.1

    UniProtKB/TrEMBL
    A0A3P9KGY0, H2LQ96
    Related
    ENSORLP00000046555.1, ENSORLT00000090669.1
    Conserved Domains (5) summary
    cd02641
    Location:708 → 767
    R3H_Smubp-2_like; R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most ...
    TIGR00376
    Location:25 → 637
    TIGR00376; DNA helicase, putative
    pfam01428
    Location:882 → 918
    zf-AN1; AN1-like Zinc finger
    pfam13087
    Location:414 → 609
    AAA_12; AAA domain
    pfam13245
    Location:196 → 254
    AAA_19; Part of AAA domain
Nucleotide Protein
Heading Accession and Version

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