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pdxp pyridoxal (pyridoxine, vitamin B6) phosphatase [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101158449, updated on 8-Mar-2024

Summary

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Gene symbol
pdxp
Gene description
pyridoxal (pyridoxine, vitamin B6) phosphatase
See related
EnsemblRapid:ENSORLG00000024748
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
zebrafish all
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Genomic context

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See pdxp in Genome Data Viewer
Location:
chromosome: 9
Exon count:
2
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 9 NC_019867.2 (7007590..7011217, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 9 NC_019867.1 (6198500..6202276, complement)

Chromosome 9 - NC_019867.2Genomic Context describing neighboring genes Neighboring gene LHFPL tetraspan subfamily member 2 protein Neighboring gene betaine--homocysteine S-methyltransferase 1 Neighboring gene alpha-ketoglutarate dehydrogenase subunit 4 Neighboring gene sperm flagellar 2 Neighboring gene LIF receptor subunit alpha a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pyridoxal phosphate phosphatase
Names
pyridoxal phosphatase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019867.2 Reference ASM223467v1 Primary Assembly

    Range
    7007590..7011217 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004072283.4 → XP_004072331.1  pyridoxal phosphate phosphatase

    UniProtKB/TrEMBL
    A0A3B3H9Y9, A0A3P9HYS6, A0A3P9LRV1
    Related
    ENSORLP00000028682.2, ENSORLT00000035029.2
    Conserved Domains (3) summary
    TIGR01452
    Location:26 → 301
    PGP_euk; phosphoglycolate/pyridoxal phosphate phosphatase family
    pfam13242
    Location:218 → 301
    Hydrolase_like; HAD-hyrolase-like
    pfam13344
    Location:28 → 129
    Hydrolase_6; Haloacid dehalogenase-like hydrolase
Nucleotide Protein
Heading Accession and Version

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