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LOC101156357 discoidin domain-containing receptor 2 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101156357, updated on 11-Apr-2024

Summary

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Gene symbol
LOC101156357
Gene description
discoidin domain-containing receptor 2
See related
EnsemblRapid:ENSORLG00000010857
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
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Genomic context

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Location:
chromosome: 17
Exon count:
16
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 17 NC_019875.2 (16630989..16640419, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 17 NC_019875.1 (16822075..16832588, complement)

Chromosome 17 - NC_019875.2Genomic Context describing neighboring genes Neighboring gene zinc finger MYM-type protein 1 Neighboring gene 3-keto-steroid reductase-like Neighboring gene carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein Neighboring gene regulator of G protein signaling 5b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables collagen binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein tyrosine kinase collagen receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
discoidin domain-containing receptor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019875.2 Reference ASM223467v1 Primary Assembly

    Range
    16630989..16640419 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023965477.1 → XP_023821245.1  discoidin domain-containing receptor 2 isoform X1

    UniProtKB/TrEMBL
    A0A3P9H8T2
    Conserved Domains (2) summary
    cd00057
    Location:7 → 108
    FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
    cd05051
    Location:477 → 779
    PTKc_DDR; Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

  2. XM_023965478.1 → XP_023821246.1  discoidin domain-containing receptor 2 isoform X2

    UniProtKB/TrEMBL
    A0A3P9IW04
    Related
    ENSORLP00000036937.2, ENSORLT00000034647.2
    Conserved Domains (2) summary
    cd00057
    Location:27 → 179
    FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
    cd05051
    Location:548 → 850
    PTKc_DDR; Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors
Nucleotide Protein
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