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LOC101155329 E3 ubiquitin-protein ligase MARCH1 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101155329, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101155329
Gene description
E3 ubiquitin-protein ligase MARCH1
See related
EnsemblRapid:ENSORLG00000007789
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
march1
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Genomic context

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Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 1 NC_019859.2 (19509950..19525794, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 1 NC_019859.1 (19399879..19415983, complement)

Chromosome 1 - NC_019859.2Genomic Context describing neighboring genes Neighboring gene transmembrane protein 154 Neighboring gene translation machinery associated 16 homolog Neighboring gene uncharacterized LOC101158421 Neighboring gene transmembrane protein 192

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables MHC protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in antigen processing and presentation of peptide antigen via MHC class II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in early endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase MARCH1; uncharacterized protein LOC101155329
Names
membrane associated ring-CH-type finger 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019859.2 Reference ASM223467v1 Primary Assembly

    Range
    19509950..19525794 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011476768.3 → XP_011475070.2  uncharacterized protein LOC101155329 isoform X1

    UniProtKB/TrEMBL
    A0A3P9JHN5, A0A3P9ME27, H2LUH6
    Related
    ENSORLP00000009753.2, ENSORLT00000009754.3
    Conserved Domains (2) summary
    COG5183
    Location:333 → 437
    SSM4; E3 ubiquitin-protein ligase DOA10 [Posttranslational modification, protein turnover, chaperones]
    cd16698
    Location:338 → 389
    RING_CH-C4HC3_MARCH1_like; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING finger protein MARCH1, MARCH8, and similar proteins

  2. XM_004066005.4 → XP_004066053.2  uncharacterized protein LOC101155329 isoform X2

    UniProtKB/TrEMBL
    A0A3P9I4S0, A0A3P9MEF2
    Related
    ENSORLP00000009755.3, ENSORLT00000009756.3
    Conserved Domains (2) summary
    COG5183
    Location:333 → 437
    SSM4; E3 ubiquitin-protein ligase DOA10 [Posttranslational modification, protein turnover, chaperones]
    cd16698
    Location:338 → 389
    RING_CH-C4HC3_MARCH1_like; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING finger protein MARCH1, MARCH8, and similar proteins

  3. XM_020703945.2 → XP_020559604.2  E3 ubiquitin-protein ligase MARCH1 isoform X3

    UniProtKB/TrEMBL
    H2LUH8
    Conserved Domains (2) summary
    COG5183
    Location:237 → 341
    SSM4; E3 ubiquitin-protein ligase DOA10 [Posttranslational modification, protein turnover, chaperones]
    cd16698
    Location:242 → 293
    RING_CH-C4HC3_MARCH1_like; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING finger protein MARCH1, MARCH8, and similar proteins
Nucleotide Protein
Heading Accession and Version

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