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sod2 superoxide dismutase 2, mitochondrial [ Takifugu rubripes (torafugu) ]

Gene ID: 101070307, updated on 8-Mar-2024

Summary

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Gene symbol
sod2
Gene description
superoxide dismutase 2, mitochondrial
See related
Ensembl:ENSTRUG00000005242
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 16
Exon count:
7
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 16 NC_042300.1 (11885104..11887463)
101 previous assembly FUGU5 (GCF_000180615.1) 16 NC_018905.1 (9495833..9498154)

Chromosome 16 - NC_042300.1Genomic Context describing neighboring genes Neighboring gene acetyl-CoA acetyltransferase 2 Neighboring gene WT1 associated protein Neighboring gene fibronectin type III domain containing 1 Neighboring gene otoferlin a Neighboring gene dynein regulatory complex subunit 1 homolog (Chlamydomonas)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables superoxide dismutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in superoxide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
superoxide dismutase [Mn], mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042300.1 Reference fTakRub1.2 Primary Assembly

    Range
    11885104..11887463
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003971874.3 → XP_003971923.1  superoxide dismutase [Mn], mitochondrial isoform X2

    UniProtKB/TrEMBL
    H2SJJ9
    Related
    ENSTRUP00000012582.3, ENSTRUT00000012643.3
    Conserved Domains (1) summary
    COG0605
    Location:30 → 227
    SodA; Superoxide dismutase [Inorganic ion transport and metabolism]

  2. XM_029849346.1 → XP_029705206.1  superoxide dismutase [Mn], mitochondrial isoform X3

  3. XM_011612261.2 → XP_011610563.1  superoxide dismutase [Mn], mitochondrial isoform X1

    UniProtKB/TrEMBL
    H2SJJ9
    Conserved Domains (1) summary
    COG0605
    Location:33 → 230
    SodA; Superoxide dismutase [Inorganic ion transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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