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sod2 superoxide dismutase 2, mitochondrial [ Danio rerio (zebrafish) ]

Gene ID: 335799, updated on 4-Nov-2018

Summary

Official Symbol
sod2provided by ZNC
Official Full Name
superoxide dismutase 2, mitochondrialprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-7742
See related
Ensembl:ENSDARG00000042644 Vega:OTTDARG00000005559
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
cb463; zgc:73051; wu:fj33b01
Orthologs

Genomic context

See sod2 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (30939178..30947547)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (31036299..31044668)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene acetyl-CoA acetyltransferase 2 Neighboring gene WT1 associated protein Neighboring gene uncharacterized LOC103909323 Neighboring gene fibronectin type III domain containing 1

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
metal ion binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 
superoxide dismutase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
superoxide dismutase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
aging IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
innate immune response IMP
Inferred from Mutant Phenotype
more info
PubMed 
neutrophil homeostasis IMP
Inferred from Mutant Phenotype
more info
PubMed 
oxidation-reduction process IEA
Inferred from Electronic Annotation
more info
 
removal of superoxide radicals IMP
Inferred from Mutant Phenotype
more info
PubMed 
response to cadmium ion IEP
Inferred from Expression Pattern
more info
PubMed 
response to methylmercury IDA
Inferred from Direct Assay
more info
PubMed 
superoxide metabolic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
superoxide dismutase [Mn], mitochondrial
Names
Mn-SOD
manganese superoxide dismutase
sod(Mn)
NP_956270.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199976.1NP_956270.1  superoxide dismutase [Mn], mitochondrial

    See identical proteins and their annotated locations for NP_956270.1

    Status: PROVISIONAL

    Source sequence(s)
    BC060895
    UniProtKB/TrEMBL
    Q6P980
    Related
    ENSDARP00000062555.3, OTTDARP00000005388, ENSDART00000062556.4, OTTDART00000006023
    Conserved Domains (3) summary
    COG0605
    Location:25224
    SodA; Superoxide dismutase [Inorganic ion transport and metabolism]
    pfam00081
    Location:27108
    Sod_Fe_N; Iron/manganese superoxide dismutases, alpha-hairpin domain
    pfam02777
    Location:115218
    Sod_Fe_C; Iron/manganese superoxide dismutases, C-terminal domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    30939178..30947547
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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