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riox1 ribosomal oxygenase 1 [ Takifugu rubripes (torafugu) ]

Gene ID: 101069081, updated on 8-Mar-2024

Summary

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Gene symbol
riox1
Gene description
ribosomal oxygenase 1
See related
Ensembl:ENSTRUG00000004204
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Orthologs
human zebrafish all
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Genomic context

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See riox1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
14
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 16 NC_042300.1 (10283140..10286073, complement)
101 previous assembly FUGU5 (GCF_000180615.1) 16 NC_018905.1 (7944697..7947999, complement)

Chromosome 16 - NC_042300.1Genomic Context describing neighboring genes Neighboring gene cleavage and polyadenylation specific factor 2 Neighboring gene NADH:ubiquinone oxidoreductase subunit B1 Neighboring gene exostosin-like glycosyltransferase 3 Neighboring gene synaptotagmin XIVb

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H3K36 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K4 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ribosomal oxygenase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042300.1 Reference fTakRub1.2 Primary Assembly

    Range
    10283140..10286073 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029849698.1 → XP_029705558.1  ribosomal oxygenase 1 isoform X4

    UniProtKB/TrEMBL
    H2SC20
    Conserved Domains (1) summary
    cl21464
    Location:28 → 305
    cupin_like; Conserved domain found in cupin and related proteins

  2. XM_029849697.1 → XP_029705557.1  ribosomal oxygenase 1 isoform X3

    UniProtKB/TrEMBL
    H2SC20
    Related
    ENSTRUP00000009949.3, ENSTRUT00000010005.3

  3. XM_029849696.1 → XP_029705556.1  ribosomal oxygenase 1 isoform X2

    UniProtKB/TrEMBL
    H2SC20
    Conserved Domains (1) summary
    cl21464
    Location:28 → 305
    cupin_like; Conserved domain found in cupin and related proteins

  4. XM_029849695.1 → XP_029705555.1  ribosomal oxygenase 1 isoform X1

    UniProtKB/TrEMBL
    H2SC20
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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