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DHX57 DExH-box helicase 57 [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101045461, updated on 8-Mar-2024

Summary

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Gene symbol
DHX57
Gene description
DExH-box helicase 57
See related
EnsemblRapid:ENSSBOG00000020579
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100918.1 (109436127..109512698)

NW_024100918.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene MORN repeat containing 2 Neighboring gene argininosuccinate synthase-like Neighboring gene gem-associated protein 6-like Neighboring gene gem-associated protein 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100918 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative ATP-dependent RNA helicase DHX57
Names
DEAH-box helicase 57

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100918.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    109436127..109512698
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003926790.3 → XP_003926839.1  putative ATP-dependent RNA helicase DHX57 isoform X1

    See identical proteins and their annotated locations for XP_003926839.1

    UniProtKB/TrEMBL
    A0A2K6SIM8, A0A2K6SIQ0
    Related
    ENSSBOP00000007247.1, ENSSBOT00000024002.2
    Conserved Domains (8) summary
    smart00356
    Location:304 → 324
    ZnF_C3H1; zinc finger
    smart00487
    Location:551 → 731
    DEXDc; DEAD-like helicases superfamily
    smart00847
    Location:1044 → 1126
    HA2; Helicase associated domain (HA2) Add an annotation
    cd00046
    Location:562 → 704
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd14317
    Location:182 → 219
    UBA_DHX57; UBA domain found in putative ATP-dependent RNA helicase DHX57 and similar proteins
    pfam00271
    Location:833 → 969
    Helicase_C; Helicase conserved C-terminal domain
    pfam05773
    Location:244 → 419
    RWD; RWD domain
    pfam07717
    Location:1165 → 1311
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold

  2. XM_039461773.1 → XP_039317707.1  putative ATP-dependent RNA helicase DHX57 isoform X2

    UniProtKB/TrEMBL
    A0A2K6SIQ0
    Conserved Domains (4) summary
    COG1643
    Location:398 → 1273
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    cd14317
    Location:79 → 116
    UBA_DHX57; UBA domain found in putative ATP-dependent RNA helicase DHX57 and similar proteins
    pfam05773
    Location:220 → 317
    RWD; RWD domain
    pfam18044
    Location:202 → 221
    zf-CCCH_4; CCCH-type zinc finger

  3. XM_010337485.1 → XP_010335787.1  putative ATP-dependent RNA helicase DHX57 isoform X2

    See identical proteins and their annotated locations for XP_010335787.1

    UniProtKB/TrEMBL
    A0A2K6SIQ0
    Conserved Domains (4) summary
    COG1643
    Location:398 → 1273
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    cd14317
    Location:79 → 116
    UBA_DHX57; UBA domain found in putative ATP-dependent RNA helicase DHX57 and similar proteins
    pfam05773
    Location:220 → 317
    RWD; RWD domain
    pfam18044
    Location:202 → 221
    zf-CCCH_4; CCCH-type zinc finger

  4. XM_010337484.1 → XP_010335786.1  putative ATP-dependent RNA helicase DHX57 isoform X1

    See identical proteins and their annotated locations for XP_010335786.1

    UniProtKB/TrEMBL
    A0A2K6SIM8, A0A2K6SIQ0
    Conserved Domains (8) summary
    smart00356
    Location:304 → 324
    ZnF_C3H1; zinc finger
    smart00487
    Location:551 → 731
    DEXDc; DEAD-like helicases superfamily
    smart00847
    Location:1044 → 1126
    HA2; Helicase associated domain (HA2) Add an annotation
    cd00046
    Location:562 → 704
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd14317
    Location:182 → 219
    UBA_DHX57; UBA domain found in putative ATP-dependent RNA helicase DHX57 and similar proteins
    pfam00271
    Location:833 → 969
    Helicase_C; Helicase conserved C-terminal domain
    pfam05773
    Location:244 → 419
    RWD; RWD domain
    pfam07717
    Location:1165 → 1311
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold
Nucleotide Protein
Heading Accession and Version

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