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LOC101040568 patr class I histocompatibility antigen, A-126 alpha chain-like [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101040568, updated on 16-Nov-2023

Summary

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Gene symbol
LOC101040568
Gene description
patr class I histocompatibility antigen, A-126 alpha chain-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024102241.1 (12803..16139)

NW_024102241.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024102241 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptide antigen binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in antigen processing and presentation of endogenous peptide antigen via MHC class Ib IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of T cell mediated cytotoxicity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
patr class I histocompatibility antigen, A-126 alpha chain-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024102241.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    12803..16139
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039467327.1 → XP_039323261.1  patr class I histocompatibility antigen, A-126 alpha chain-like isoform X2

    UniProtKB/TrEMBL
    A0A2K6SCX5
    Conserved Domains (4) summary
    pfam00129
    Location:23 → 200
    MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
    pfam06623
    Location:343 → 359
    MHC_I_C; MHC_I C-terminus
    cd00096
    Location:205 → 213
    Ig; Ig strand A [structural motif]
    cl11960
    Location:201 → 297
    Ig; Immunoglobulin domain

  2. XM_039467326.1 → XP_039323260.1  patr class I histocompatibility antigen, A-126 alpha chain-like isoform X1

    UniProtKB/TrEMBL
    A0A2K6SCX5
    Conserved Domains (4) summary
    pfam00129
    Location:1 → 175
    MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
    pfam06623
    Location:318 → 334
    MHC_I_C; MHC_I C-terminus
    cd00096
    Location:180 → 188
    Ig; Ig strand A [structural motif]
    cl11960
    Location:176 → 272
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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