U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

COL4A5 collagen type IV alpha 5 chain [ Papio anubis (olive baboon) ]

Gene ID: 101026688, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
COL4A5
Gene description
collagen type IV alpha 5 chain
See related
Ensembl:ENSPANG00000025513
Gene type
protein coding
RefSeq status
MODEL
Organism
Papio anubis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Papio
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: X
Exon count:
54
Annotation release Status Assembly Chr Location
104 current Panubis1.0 (GCF_008728515.1) X NC_044996.1 (44773356..45043540, complement)
103 previous assembly Panu_3.0 (GCF_000264685.3) X NC_018172.2 (97962518..98235678)

Chromosome X - NC_044996.1Genomic Context describing neighboring genes Neighboring gene non-histone chromosomal protein HMG-14 pseudogene Neighboring gene insulin receptor substrate 4 Neighboring gene collagen type IV alpha 6 chain Neighboring gene autophagy related 4A cysteine peptidase

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
collagen alpha-5(IV) chain

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Papio anubis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Panubis1.0 Primary Assembly

Genomic

  1. NC_044996.1 Reference Panubis1.0 Primary Assembly

    Range
    44773356..45043540 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031660975.1 → XP_031516835.1  collagen alpha-5(IV) chain isoform X1

    UniProtKB/TrEMBL
    A0A8I5NHR2
    Conserved Domains (2) summary
    pfam01391
    Location:1291 → 1350
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01413
    Location:1579 → 1688
    C4; C-terminal tandem repeated domain in type 4 procollagen

  2. XM_031660978.1 → XP_031516838.1  collagen alpha-5(IV) chain isoform X3

    UniProtKB/TrEMBL
    A0A096MZH9
    Related
    ENSPANP00000005377.3, ENSPANT00000022629.3
    Conserved Domains (2) summary
    pfam01391
    Location:1285 → 1344
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01413
    Location:1573 → 1682
    C4; C-terminal tandem repeated domain in type 4 procollagen

  3. XM_031660977.1 → XP_031516837.1  collagen alpha-5(IV) chain isoform X2

    UniProtKB/TrEMBL
    A0A8I5NFD1
    Related
    ENSPANP00000052990.1, ENSPANT00000063354.1
    Conserved Domains (2) summary
    pfam01391
    Location:1288 → 1347
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01413
    Location:1576 → 1685
    C4; C-terminal tandem repeated domain in type 4 procollagen

  4. XM_031660976.1 → XP_031516836.1  collagen alpha-5(IV) chain isoform X1

    UniProtKB/TrEMBL
    A0A8I5NHR2
    Related
    ENSPANP00000054610.1, ENSPANT00000079518.1
    Conserved Domains (2) summary
    pfam01391
    Location:1291 → 1350
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01413
    Location:1579 → 1688
    C4; C-terminal tandem repeated domain in type 4 procollagen
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.