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Panu_3.0

Organism name:
Papio anubis (olive baboon)
Isolate:
1X1155
Sex:
female
BioSample:
SAMN02981400
BioProject:
PRJNA54005
Submitter:
Human Genome Sequencing Center
Date:
2017/04/20
Synonyms:
papAnu4
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000264685.2 (latest)
RefSeq assembly accession:
GCF_000264685.3 (suppressed), see latest assembly
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for GenBank version
WGS Project:
AHZZ02
Assembly method:
CABOG v. 6.1; ATLAS-LINK v. 1.0; ATLAS-GAPFILL v. 2.0; PBJelly2 v. 14.9.9; Pilon v. 1.18
Genome coverage:
104.0x
Sequencing technology:
Sanger 3730; 454 FLX; Illumina; PacBio

IDs: 1082401 [UID] 4420218 [GenBank] 4682678 [RefSeq]

See Genome Information for Papio anubis

There are 2 assemblies for this organism

See more

History (Show revision history)

Global statistics

Total sequence length2,959,356,508
Total ungapped length2,936,988,423
Gaps between scaffolds7,900
Number of scaffolds71,134
Scaffold N50585,721
Scaffold L501,481
Number of contigs118,810
Contig N50149,817
Contig L505,418
Total number of chromosomes and plasmids21
Number of component sequences (WGS or clone)118,810

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000264695.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM001491.2=NC_018152.20
Chromosome 2CM001492.2=NC_018153.20
Chromosome 3CM001493.2=NC_018154.20
Chromosome 4CM001494.2=NC_018155.20
Chromosome 5CM001495.2=NC_018156.20
Chromosome 6CM001496.2=NC_018157.20
Chromosome 7CM001497.2=NC_018158.20
Chromosome 8CM001498.2=NC_018159.20
Chromosome 9CM001499.2=NC_018160.20
Chromosome 10CM001500.2=NC_018161.20
Chromosome 11CM001501.2=NC_018162.20
Chromosome 12CM001502.2=NC_018163.20
Chromosome 13CM001503.2=NC_018164.20
Chromosome 14CM001504.2=NC_018165.20
Chromosome 15CM001505.2=NC_018166.20
Chromosome 16CM001506.2=NC_018167.20
Chromosome 17CM001507.2=NC_018168.20
Chromosome 18CM001508.2=NC_018169.20
Chromosome 19CM001509.2=NC_018170.20
Chromosome 20CM001510.2=NC_018171.20
Chromosome XCM001511.2=NC_018172.20
unplacedn/an/an/a63,213

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All2,959,356,50871,1342,936,988,423585,72147,6767,900
Chromosome 1217,458,864516216,761,608817,7282,544515
Chromosome 2188,283,584477187,780,127656,9481,630476
Chromosome 3181,338,541567180,624,644574,8252,102566
Chromosome 4166,074,386389165,567,567674,2971,693388
Chromosome 5183,742,232457183,169,255723,6661,889456
Chromosome 6175,400,206518174,899,566606,0001,606517
Chromosome 7162,899,863440162,389,395600,4401,778439
Chromosome 8140,346,614437139,922,963642,4671,377436
Chromosome 9125,784,921337125,415,786655,2061,345336
Chromosome 1091,330,06727990,995,455622,1251,223278
Chromosome 11132,960,392350132,503,587682,1731,550349
Chromosome 12128,289,686311127,974,393671,1511,099310
Chromosome 13104,990,034294104,668,251605,9451,014293
Chromosome 14124,513,186389124,128,407610,5981,357388
Chromosome 15108,049,171291107,715,971745,4651,267290
Chromosome 1674,961,50622374,604,011601,2401,232222
Chromosome 1791,399,20131191,138,160628,712980310
Chromosome 1872,530,12218672,365,130662,076668185
Chromosome 1951,387,49430250,843,653317,0511,752301
Chromosome 2072,050,62218071,760,314685,918938179
Chromosome X143,691,637667142,768,202405,3232,224666
unplaced221,874,17963,213208,991,9788,11516,4080
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