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GALNTL6 polypeptide N-acetylgalactosaminyltransferase like 6 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100992452, updated on 8-Mar-2024

Summary

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Gene symbol
GALNTL6
Gene description
polypeptide N-acetylgalactosaminyltransferase like 6
See related
Ensembl:ENSPPAG00000003147
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See GALNTL6 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 3 NC_073252.2 (169566332..170802323)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 4 NC_073253.1 (169946524..171183408)

Chromosome 3 - NC_073252.2Genomic Context describing neighboring genes Neighboring gene RWD domain-containing protein 2B-like Neighboring gene uncharacterized LOC130541472 Neighboring gene ubiquitin-conjugating enzyme E2 N-like Neighboring gene AP-3 complex subunit sigma-1 Neighboring gene uncharacterized LOC130541473 Neighboring gene atherin-like Neighboring gene polypeptide N-acetylgalactosaminyltransferase 7 Neighboring gene high mobility group box 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polypeptide N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase-like 6
Names
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073252.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    169566332..170802323
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034959428.2 → XP_034815319.1  polypeptide N-acetylgalactosaminyltransferase-like 6 isoform X1

    UniProtKB/TrEMBL
    A0A2R8Z7F0
    Conserved Domains (2) summary
    cd02510
    Location:143 → 438
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:454 → 582
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_063603996.1 → XP_063460066.1  polypeptide N-acetylgalactosaminyltransferase-like 6 isoform X2

  3. XM_003823503.6 → XP_003823551.4  polypeptide N-acetylgalactosaminyltransferase-like 6 isoform X3

    UniProtKB/TrEMBL
    A0A2R8Z7F0
    Conserved Domains (2) summary
    cd02510
    Location:151 → 446
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:462 → 590
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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