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CNOT6 CCR4-NOT transcription complex subunit 6 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100991206, updated on 8-Mar-2024

Summary

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Gene symbol
CNOT6
Gene description
CCR4-NOT transcription complex subunit 6
See related
Ensembl:ENSPPAG00000032253
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 4 NC_073253.2 (175515935..175600656)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 5 NC_073254.1 (173680001..173764349)

Chromosome 4 - NC_073253.2Genomic Context describing neighboring genes Neighboring gene glutamine-fructose-6-phosphate transaminase 2 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC117980182 Neighboring gene secretoglobin family 3A member 1 Neighboring gene fms related receptor tyrosine kinase 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables poly(A)-specific ribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CCR4-NOT transcription complex subunit 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073253.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    175515935..175600656
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034961229.4 → XP_034817120.1  CCR4-NOT transcription complex subunit 6 isoform X1

    UniProtKB/TrEMBL
    A0A2R9AR59
    Conserved Domains (3) summary
    cd10313
    Location:191 → 540
    Deadenylase_CCR4a; C-terminal deadenylase domain of CCR4a, also known as CCR4-NOT transcription complex subunit 6
    COG4886
    Location:52 → 159
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:33 → 52
    LRR_1; leucine-rich repeat [structural motif]

  2. XM_034961232.4 → XP_034817123.1  CCR4-NOT transcription complex subunit 6 isoform X2

    Conserved Domains (3) summary
    cd10313
    Location:186 → 535
    Deadenylase_CCR4a; C-terminal deadenylase domain of CCR4a, also known as CCR4-NOT transcription complex subunit 6
    COG4886
    Location:52 → 158
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:33 → 52
    LRR_1; leucine-rich repeat [structural motif]

  3. XM_055112923.2 → XP_054968898.1  CCR4-NOT transcription complex subunit 6 isoform X1

    UniProtKB/TrEMBL
    A0A2R9AR59

  4. XM_055112922.2 → XP_054968897.1  CCR4-NOT transcription complex subunit 6 isoform X1

    UniProtKB/TrEMBL
    A0A2R9AR59

  5. XM_034961230.3 → XP_034817121.1  CCR4-NOT transcription complex subunit 6 isoform X1

    UniProtKB/TrEMBL
    A0A2R9AR59
    Conserved Domains (3) summary
    cd10313
    Location:191 → 540
    Deadenylase_CCR4a; C-terminal deadenylase domain of CCR4a, also known as CCR4-NOT transcription complex subunit 6
    COG4886
    Location:52 → 159
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:33 → 52
    LRR_1; leucine-rich repeat [structural motif]
Nucleotide Protein
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