U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

UBE3D ubiquitin protein ligase E3D [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100972477, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
UBE3D
Gene description
ubiquitin protein ligase E3D
See related
Ensembl:ENSPPAG00000041135
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 5
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 5 NC_073254.2 (102692439..103166887, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 6 NC_073255.1 (100886340..101061115, complement)

Chromosome 5 - NC_073254.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117980623 Neighboring gene uncharacterized LOC134730608 Neighboring gene trophoblast glycoprotein Neighboring gene DOP1 leucine zipper like protein A Neighboring gene RWD domain containing 2A Neighboring gene phosphoglucomutase 3

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cyclin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin conjugating enzyme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein autoubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein monoubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
E3 ubiquitin-protein ligase E3D

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073254.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    102692439..103166887 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063605398.1 → XP_063461468.1  E3 ubiquitin-protein ligase E3D isoform X1

  2. XM_063605399.1 → XP_063461469.1  E3 ubiquitin-protein ligase E3D isoform X2

  3. XM_003816375.6 → XP_003816423.1  E3 ubiquitin-protein ligase E3D isoform X7

    UniProtKB/TrEMBL
    A0A2R9C4M9
    Related
    ENSPPAP00000036749.1
    Conserved Domains (1) summary
    pfam09814
    Location:13 → 379
    HECT_2; HECT-like Ubiquitin-conjugating enzyme (E2)-binding

  4. XM_034962436.2 → XP_034818327.1  E3 ubiquitin-protein ligase E3D isoform X3

    Conserved Domains (1) summary
    pfam09814
    Location:107 → 377
    HECT_2; HECT-like Ubiquitin-conjugating enzyme (E2)-binding

  5. XM_034962437.3 → XP_034818328.1  E3 ubiquitin-protein ligase E3D isoform X4

    Conserved Domains (1) summary
    pfam09814
    Location:107 → 377
    HECT_2; HECT-like Ubiquitin-conjugating enzyme (E2)-binding

  6. XM_014345409.4 → XP_014200895.1  E3 ubiquitin-protein ligase E3D isoform X6

    Conserved Domains (1) summary
    pfam09814
    Location:13 → 379
    HECT_2; HECT-like Ubiquitin-conjugating enzyme (E2)-binding

  7. XM_034962438.3 → XP_034818329.1  E3 ubiquitin-protein ligase E3D isoform X5

    Conserved Domains (1) summary
    pfam09814
    Location:107 → 377
    HECT_2; HECT-like Ubiquitin-conjugating enzyme (E2)-binding

  8. XM_034962441.3 → XP_034818332.1  E3 ubiquitin-protein ligase E3D isoform X8

    Conserved Domains (1) summary
    pfam09814
    Location:107 → 333
    HECT_2; HECT-like Ubiquitin-conjugating enzyme (E2)-binding
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.