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COPS4 COP9 signalosome subunit 4 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100969160, updated on 8-Mar-2024

Summary

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Gene symbol
COPS4
Gene description
COP9 signalosome subunit 4
See related
Ensembl:ENSPPAG00000024887
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See COPS4 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 3 NC_073252.2 (46997314..47039384, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 4 NC_073253.1 (47186479..47228019, complement)

Chromosome 3 - NC_073252.2Genomic Context describing neighboring genes Neighboring gene aminomethyltransferase, mitochondrial-like Neighboring gene uncharacterized LOC134730267 Neighboring gene placenta associated 8 Neighboring gene U6 spliceosomal RNA Neighboring gene lin-54 DREAM MuvB core complex component Neighboring gene THAP domain containing 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
part_of COP9 signalosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
COP9 signalosome complex subunit 4
Names
COP9 constitutive photomorphogenic homolog subunit 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073252.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    46997314..47039384 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003832250.5 → XP_003832298.1  COP9 signalosome complex subunit 4 isoform X2

    See identical proteins and their annotated locations for XP_003832298.1

    UniProtKB/TrEMBL
    A0A2R8ZN25, A0A2R8ZPE0
    Related
    ENSPPAP00000006348.1
    Conserved Domains (3) summary
    COG5071
    Location:71 → 377
    RPN5; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
    pfam18420
    Location:365 → 406
    CSN4_RPN5_eIF3a; CSN4/RPN5/eIF3a helix turn helix domain
    pfam01399
    Location:264 → 362
    PCI; PCI domain

  2. XM_034958551.3 → XP_034814442.1  COP9 signalosome complex subunit 4 isoform X1

    UniProtKB/TrEMBL
    A0A2R8ZU24
    Conserved Domains (2) summary
    COG5071
    Location:71 → 374
    RPN5; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
    pfam01399
    Location:264 → 362
    PCI; PCI domain

  3. XM_003832251.4 → XP_003832299.1  COP9 signalosome complex subunit 4 isoform X3

    See identical proteins and their annotated locations for XP_003832299.1

    UniProtKB/TrEMBL
    A0A2R8ZP91, A0A2R8ZU24
    Related
    ENSPPAP00000006355.1
    Conserved Domains (1) summary
    COG5071
    Location:71 → 337
    RPN5; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
Heading Accession and Version

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