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ZMAT5 zinc finger matrin-type 5 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100967402, updated on 3-Apr-2024

Summary

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Gene symbol
ZMAT5
Gene description
zinc finger matrin-type 5
See related
Ensembl:ENSPPAG00000029148
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 23
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 23 NC_085927.1 (39702607..39738750, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 22 NC_073271.1 (42403926..42440070, complement)

Chromosome 23 - NC_085927.1Genomic Context describing neighboring genes Neighboring gene ribulose-phosphate 3-epimerase-like Neighboring gene NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor Neighboring gene uncharacterized LOC117977389 Neighboring gene calcium binding protein 7 Neighboring gene cytochrome b-c1 complex subunit 9 Neighboring gene activating signal cointegrator 1 complex subunit 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger matrin-type protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_085927.1 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    39702607..39738750 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003812001.5 → XP_003812049.1  zinc finger matrin-type protein 5

    See identical proteins and their annotated locations for XP_003812049.1

    UniProtKB/TrEMBL
    A0A2R9A8C4
    Conserved Domains (2) summary
    cl22907
    Location:4 → 46
    zf-U1; U1 zinc finger
    pfam00642
    Location:55 → 76
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

  2. XM_003812000.7 → XP_003812048.1  zinc finger matrin-type protein 5

    See identical proteins and their annotated locations for XP_003812048.1

    UniProtKB/TrEMBL
    A0A2R9A8C4
    Related
    ENSPPAP00000011885.1
    Conserved Domains (2) summary
    cl22907
    Location:4 → 46
    zf-U1; U1 zinc finger
    pfam00642
    Location:55 → 76
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

  3. XM_063603044.1 → XP_063459114.1  zinc finger matrin-type protein 5

    UniProtKB/TrEMBL
    A0A2R9A8C4
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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