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ZMAT5 zinc finger matrin-type 5 [ Homo sapiens (human) ]

Gene ID: 55954, updated on 23-Nov-2021

Summary

Official Symbol
ZMAT5provided by HGNC
Official Full Name
zinc finger matrin-type 5provided by HGNC
Primary source
HGNC:HGNC:28046
See related
Ensembl:ENSG00000100319
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ZC3H19; SNRNP20; U11/U12-20K
Expression
Ubiquitous expression in adrenal (RPKM 7.7), lung (RPKM 7.3) and 25 other tissues See more
Orthologs
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Genomic context

See ZMAT5 in Genome Data Viewer
Location:
22q12.2
Exon count:
7
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 22 NC_000022.11 (29730956..29767007, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (30126945..30162996, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 2653 Neighboring gene nipsnap homolog 1 Neighboring gene ribulose-5-phosphate-3-epimerase pseudogene 4 Neighboring gene NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor Neighboring gene calcium binding protein 7 Neighboring gene ubiquinol-cytochrome c reductase, complex III subunit X Neighboring gene activating signal cointegrator 1 complex subunit 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in RNA splicing IC
Inferred by Curator
more info
PubMed 
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of U12-type spliceosomal complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of U12-type spliceosomal complex IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
 
located_in nucleoplasm TAS
Traceable Author Statement
more info
 

General protein information

Preferred Names
zinc finger matrin-type protein 5
Names
U11/U12 small nuclear ribonucleoprotein 20 kDa protein
U11/U12 snRNP 20 kDa protein
U11/U12 snRNP 20K
zinc finger CCCH-type containing 19

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001003692.2NP_001003692.1  zinc finger matrin-type protein 5

    See identical proteins and their annotated locations for NP_001003692.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 both encode the same protein.
    Source sequence(s)
    AC004882, BC009717, BU598307
    Consensus CDS
    CCDS13868.1
    UniProtKB/Swiss-Prot
    Q9UDW3
    UniProtKB/TrEMBL
    A0A024R1I1
    Related
    ENSP00000344241.3, ENST00000344318.4
    Conserved Domains (2) summary
    cl22907
    Location:446
    zf-U1; U1 zinc finger
    pfam00642
    Location:5576
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
  2. NM_001318129.2NP_001305058.1  zinc finger matrin-type protein 5

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1-3 encode the same protein.
    Source sequence(s)
    BC009717, BQ931527, DT217179
    Consensus CDS
    CCDS13868.1
    UniProtKB/Swiss-Prot
    Q9UDW3
    UniProtKB/TrEMBL
    A0A024R1I1
    Conserved Domains (2) summary
    cl22907
    Location:446
    zf-U1; U1 zinc finger
    pfam00642
    Location:5576
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
  3. NM_019103.3NP_061976.1  zinc finger matrin-type protein 5

    See identical proteins and their annotated locations for NP_061976.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 both encode the same protein.
    Source sequence(s)
    AA312132, AC004882, AL160311, BC009717, BG285784
    Consensus CDS
    CCDS13868.1
    UniProtKB/Swiss-Prot
    Q9UDW3
    UniProtKB/TrEMBL
    A0A024R1I1
    Conserved Domains (2) summary
    cl22907
    Location:446
    zf-U1; U1 zinc finger
    pfam00642
    Location:5576
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p13 Primary Assembly

    Range
    29730956..29767007 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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