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A1CF APOBEC1 complementation factor [ Otolemur garnettii (small-eared galago) ]

Gene ID: 100956653, updated on 8-Mar-2024

Summary

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Gene symbol
A1CF
Gene description
APOBEC1 complementation factor
See related
Ensembl:ENSOGAG00000012884
Gene type
protein coding
RefSeq status
MODEL
Organism
Otolemur garnettii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Galagidae; Otolemur
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current OtoGar3 (GCF_000181295.1) Unplaced Scaffold NW_003852403.1 (32442365..32517412)

NW_003852403.1Genomic Context describing neighboring genes Neighboring gene protein kinase cGMP-dependent 1 Neighboring gene mitochondrial import receptor subunit TOM7 homolog pseudogene Neighboring gene cleavage stimulation factor subunit 2 tau variant Neighboring gene N-acylsphingosine amidohydrolase 2 Neighboring gene sphingomyelin synthase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003852403 Unplaced Scaffold Reference OtoGar3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
APOBEC1 complementation factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Otolemur garnettii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OtoGar3

Genomic

  1. NW_003852403.1 Reference OtoGar3

    Range
    32442365..32517412
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012801425.1 → XP_012656879.1  APOBEC1 complementation factor isoform X1

    See identical proteins and their annotated locations for XP_012656879.1

    Conserved Domains (5) summary
    cd12486
    Location:55 → 132
    RRM1_ACF; RNA recognition motif 1 found in vertebrate APOBEC-1 complementation factor (ACF)
    cd12490
    Location:134 → 218
    RRM2_ACF; RNA recognition motif 2 in vertebrate APOBEC-1 complementation factor (ACF)
    cd12498
    Location:223 → 305
    RRM3_ACF; RNA recognition motif 3 in vertebrate APOBEC-1 complementation factor (ACF)
    TIGR01648
    Location:2 → 599
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    pfam14709
    Location:447 → 523
    DND1_DSRM; double strand RNA binding domain from DEAD END PROTEIN 1

  2. XM_012801427.1 → XP_012656881.1  APOBEC1 complementation factor isoform X3

    Conserved Domains (5) summary
    cd12486
    Location:55 → 132
    RRM1_ACF; RNA recognition motif 1 found in vertebrate APOBEC-1 complementation factor (ACF)
    cd12490
    Location:134 → 218
    RRM2_ACF; RNA recognition motif 2 in vertebrate APOBEC-1 complementation factor (ACF)
    cd12498
    Location:223 → 305
    RRM3_ACF; RNA recognition motif 3 in vertebrate APOBEC-1 complementation factor (ACF)
    TIGR01648
    Location:2 → 591
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    pfam14709
    Location:439 → 515
    DND1_DSRM; double strand RNA binding domain from DEAD END PROTEIN 1

  3. XM_003783670.2 → XP_003783718.1  APOBEC1 complementation factor isoform X4

    Conserved Domains (5) summary
    cd12486
    Location:55 → 132
    RRM1_ACF; RNA recognition motif 1 found in vertebrate APOBEC-1 complementation factor (ACF)
    cd12490
    Location:134 → 218
    RRM2_ACF; RNA recognition motif 2 in vertebrate APOBEC-1 complementation factor (ACF)
    cd12498
    Location:223 → 305
    RRM3_ACF; RNA recognition motif 3 in vertebrate APOBEC-1 complementation factor (ACF)
    TIGR01648
    Location:2 → 584
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    pfam14709
    Location:439 → 515
    DND1_DSRM; double strand RNA binding domain from DEAD END PROTEIN 1

  4. XM_003783669.2 → XP_003783717.1  APOBEC1 complementation factor isoform X2

    UniProtKB/TrEMBL
    H0X7Y1
    Related
    ENSOGAP00000011549.2, ENSOGAT00000012888.2
    Conserved Domains (5) summary
    cd12486
    Location:55 → 132
    RRM1_ACF; RNA recognition motif 1 found in vertebrate APOBEC-1 complementation factor (ACF)
    cd12490
    Location:134 → 218
    RRM2_ACF; RNA recognition motif 2 in vertebrate APOBEC-1 complementation factor (ACF)
    cd12498
    Location:223 → 305
    RRM3_ACF; RNA recognition motif 3 in vertebrate APOBEC-1 complementation factor (ACF)
    TIGR01648
    Location:2 → 592
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    pfam14709
    Location:447 → 523
    DND1_DSRM; double strand RNA binding domain from DEAD END PROTEIN 1
Nucleotide Protein
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