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NCBP1 nuclear cap binding protein subunit 1 [ Otolemur garnettii (small-eared galago) ]

Gene ID: 100949851, updated on 8-Mar-2024

Summary

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Gene symbol
NCBP1
Gene description
nuclear cap binding protein subunit 1
See related
Ensembl:ENSOGAG00000013888
Gene type
protein coding
RefSeq status
MODEL
Organism
Otolemur garnettii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Galagidae; Otolemur
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
102 current OtoGar3 (GCF_000181295.1) Unplaced Scaffold NW_003852409.1 (2359959..2399198)

NW_003852409.1Genomic Context describing neighboring genes Neighboring gene tropomodulin 1 Neighboring gene NXPE family member 3-like Neighboring gene thiosulfate sulfurtransferase like domain containing 2 Neighboring gene U6 spliceosomal RNA Neighboring gene XPA, DNA damage recognition and repair factor Neighboring gene voltage-dependent anion-selective channel protein 3 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003852409 Unplaced Scaffold Reference OtoGar3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA cap binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nuclear cap binding complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear cap-binding protein subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Otolemur garnettii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OtoGar3

Genomic

  1. NW_003852409.1 Reference OtoGar3

    Range
    2359959..2399198
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003785156.3 → XP_003785204.1  nuclear cap-binding protein subunit 1 isoform X1

    UniProtKB/TrEMBL
    H0XA17
    Related
    ENSOGAP00000012442.2, ENSOGAT00000013895.2
    Conserved Domains (3) summary
    smart00543
    Location:28 → 240
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam09088
    Location:351 → 470
    MIF4G_like; MIF4G like
    pfam09090
    Location:491 → 754
    MIF4G_like_2; MIF4G like

  2. XM_023510523.1 → XP_023366291.1  nuclear cap-binding protein subunit 1 isoform X2

    Conserved Domains (2) summary
    pfam09088
    Location:161 → 280
    MIF4G_like; MIF4G like
    pfam09090
    Location:295 → 569
    MIF4G_like_2; MIF4G like
Nucleotide Protein
Heading Accession and Version

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