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RNY1P5 RNY1 pseudogene 5 [ Homo sapiens (human) ]

Gene ID: 100862667, updated on 17-Sep-2024

Summary

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Official Symbol
RNY1P5provided by HGNC
Official Full Name
RNY1 pseudogene 5provided by HGNC
Primary source
HGNC:HGNC:42482
See related
Ensembl:ENSG00000206617 AllianceGenome:HGNC:42482
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RNY1P5 in Genome Data Viewer
Location:
13q22.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (74289100..74289214, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (73511098..73511212, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (74863237..74863351, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene KLF transcription factor 12 Neighboring gene uncharacterized LOC124903182 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_33299 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_33300 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_33301 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_33303 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7817 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr13:74609849-74610779 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr13:74610780-74611709 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7818 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7819 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5399 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7820 Neighboring gene NANOG hESC enhancer GRCh37_chr13:74749652-74750153 Neighboring gene Sharpr-MPRA regulatory region 11269 Neighboring gene HNF1 motif-containing MPRA enhancer 52 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:74815323-74815876 Neighboring gene long intergenic non-protein coding RNA 402 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:74861026-74861526 Neighboring gene Sharpr-MPRA regulatory region 2285 Neighboring gene uncharacterized LOC105370259 Neighboring gene NANOG hESC enhancer GRCh37_chr13:74875892-74876393 Neighboring gene uncharacterized LOC100288208 Neighboring gene ribosomal protein L21 pseudogene 108

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • RNA, Ro-associated Y1 pseudogene 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_032098.1 

    Range
    101..215
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    74289100..74289214 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    73511098..73511212 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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