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LOC100832541 MADS-box transcription factor 21-like [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100832541, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100832541
Gene description
MADS-box transcription factor 21-like
Locus tag
BRADI_2g25090v3
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
Also known as
MADS4; MADS-box
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Genomic context

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Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 2 NC_016132.3 (22905729..22911962)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 2 NC_016132.2 (22898888..22905102)

Chromosome 2 - NC_016132.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106866114 Neighboring gene proline-rich receptor-like protein kinase PERK10 Neighboring gene uncharacterized LOC100828190 Neighboring gene protein root UVB sensitive 6 Neighboring gene protein root UVB sensitive 6-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
MADS-box transcription factor 21-like; uncharacterized protein LOC100832541

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001279892.1 → NP_001266821.1  MADS-box transcription factor 21-like

    See identical proteins and their annotated locations for NP_001266821.1

    Status: PROVISIONAL

    Source sequence(s)
    HQ588323
    UniProtKB/TrEMBL
    G9BIK9
    Conserved Domains (2) summary
    cd00265
    Location:2 → 75
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:84 → 171
    K-box; K-box region

RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016132.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    22905729..22911962
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010232017.3 → XP_010230319.1  uncharacterized protein LOC100832541 isoform X1

    See identical proteins and their annotated locations for XP_010230319.1

    UniProtKB/TrEMBL
    G9BIK9
    Conserved Domains (2) summary
    cd00265
    Location:2 → 75
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:84 → 171
    K-box; K-box region

  2. XM_024458156.1 → XP_024313924.1  uncharacterized protein LOC100832541 isoform X1

    UniProtKB/TrEMBL
    G9BIK9
    Conserved Domains (2) summary
    cd00265
    Location:2 → 75
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:84 → 171
    K-box; K-box region
Nucleotide Protein Strain
Heading Accession and Version

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