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LOC100831961 ubiquitin carboxyl-terminal hydrolase 21 [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100831961, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100831961
Gene description
ubiquitin carboxyl-terminal hydrolase 21
Locus tag
BRADI_3g52210v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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Location:
chromosome: 3
Exon count:
15
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 3 NC_016133.3 (52951771..52957307)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 3 NC_016133.2 (53247412..53252924)

Chromosome 3 - NC_016133.3Genomic Context describing neighboring genes Neighboring gene chaperone protein DnaJ Neighboring gene UDP-N-acetylglucosamine transferase subunit ALG14 homolog Neighboring gene ABC transporter B family member 2 Neighboring gene F-box/LRR-repeat protein At1g06630

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 21

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016133.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    52951771..52957307
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010237538.3 → XP_010235840.1  ubiquitin carboxyl-terminal hydrolase 21 isoform X1

    UniProtKB/TrEMBL
    A0A0Q3JQL7
    Conserved Domains (2) summary
    cl02553
    Location:205 → 511
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
    pfam00443
    Location:206 → 510
    UCH; Ubiquitin carboxyl-terminal hydrolase

  2. XM_010237539.3 → XP_010235841.1  ubiquitin carboxyl-terminal hydrolase 21 isoform X2

    UniProtKB/TrEMBL
    A0A0Q3FMW1
    Conserved Domains (2) summary
    cl02553
    Location:204 → 510
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
    pfam00443
    Location:205 → 509
    UCH; Ubiquitin carboxyl-terminal hydrolase
Nucleotide Protein Strain
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