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LOC100829599 probable phospholipid hydroperoxide glutathione peroxidase [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100829599, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100829599
Gene description
probable phospholipid hydroperoxide glutathione peroxidase
Locus tag
BRADI_3g51010v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 3 NC_016133.3 (51886845..51889160)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 3 NC_016133.2 (52183507..52185833)

Chromosome 3 - NC_016133.3Genomic Context describing neighboring genes Neighboring gene FT-interacting protein 1 Neighboring gene ribosomal RNA small subunit methyltransferase Neighboring gene tripeptidyl-peptidase 2 Neighboring gene translation initiation factor IF-2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale collection and analysis of full-length cDNAs from Brachypodium distachyon and integration with Pooideae sequence resources. Mochida K, et al. PLoS One, 2013. PMID 24130698, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glutathione peroxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in response to oxidative stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable phospholipid hydroperoxide glutathione peroxidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016133.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    51886845..51889160
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003569998.4 → XP_003570046.1  probable phospholipid hydroperoxide glutathione peroxidase

    UniProtKB/TrEMBL
    I1ICD3
    Conserved Domains (2) summary
    pfam00578
    Location:84 → 219
    AhpC-TSA; AhpC/TSA family
    cl00388
    Location:82 → 240
    Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold
Nucleotide Protein Strain
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