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LOC100825943 formamidopyrimidine-DNA glycosylase [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100825943, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100825943
Gene description
formamidopyrimidine-DNA glycosylase
Locus tag
BRADI_3g20150v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 3 NC_016133.3 (19253201..19259258)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 3 NC_016133.2 (19235041..19240968)

Chromosome 3 - NC_016133.3Genomic Context describing neighboring genes Neighboring gene sugar transport protein MST6-like Neighboring gene uncharacterized LOC112271925 Neighboring gene uncharacterized LOC112271926 Neighboring gene uncharacterized LOC104583597 Neighboring gene uncharacterized LOC104584089

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-(apurinic or apyrimidinic site) endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidized purine nucleobase lesion DNA N-glycosylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in base-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
formamidopyrimidine-DNA glycosylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016133.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    19253201..19259258
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003573635.4 → XP_003573683.1  formamidopyrimidine-DNA glycosylase isoform X1

    UniProtKB/TrEMBL
    A0A2K2CYG8, I1I2Q5
    Conserved Domains (3) summary
    cd08972
    Location:1 → 134
    PF_Nei_N; N-terminal domain of the plant and fungal Nei and related proteins
    TIGR00577
    Location:2 → 276
    fpg; DNA-formamidopyrimidine glycosylase
    pfam06831
    Location:146 → 237
    H2TH; Formamidopyrimidine-DNA glycosylase H2TH domain

  2. XM_010236266.3 → XP_010234568.1  formamidopyrimidine-DNA glycosylase isoform X2

    UniProtKB/TrEMBL
    A0A0Q3F8A2, A0A2K2CYH3
    Conserved Domains (3) summary
    cd08972
    Location:1 → 134
    PF_Nei_N; N-terminal domain of the plant and fungal Nei and related proteins
    TIGR00577
    Location:2 → 234
    fpg; DNA-formamidopyrimidine glycosylase
    pfam06831
    Location:116 → 195
    H2TH; Formamidopyrimidine-DNA glycosylase H2TH domain

  3. XM_014900000.2 → XP_014755486.1  formamidopyrimidine-DNA glycosylase isoform X3

    UniProtKB/TrEMBL
    A0A0Q3JCE5
    Conserved Domains (3) summary
    cd08972
    Location:1 → 113
    PF_Nei_N; N-terminal domain of the plant and fungal Nei and related proteins
    TIGR00577
    Location:2 → 211
    fpg; DNA-formamidopyrimidine glycosylase
    pfam06831
    Location:114 → 172
    H2TH; Formamidopyrimidine-DNA glycosylase H2TH domain
Nucleotide Protein Strain
Heading Accession and Version

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