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DNAJC27 DnaJ heat shock protein family (Hsp40) member C27 [ Sus scrofa (pig) ]

Gene ID: 100738251, updated on 8-Mar-2024

Summary

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Official Symbol
DNAJC27provided by VGNC
Official Full Name
DnaJ heat shock protein family (Hsp40) member C27provided by VGNC
Primary source
VGNC:VGNC:102563
See related
Ensembl:ENSSSCG00000008577
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 5.3), heart (RPKM 3.2) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (113816718..113857117)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (121005430..121045814)

Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene proopiomelanocortin Neighboring gene EFR3 homolog B Neighboring gene adenylate cyclase 3 Neighboring gene centromere protein O Neighboring gene peptidyl-tRNA hydrolase domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dnaJ homolog subfamily C member 27

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

    Range
    113816718..113857117
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021087775.1 → XP_020943434.1  dnaJ homolog subfamily C member 27 isoform X1

    UniProtKB/TrEMBL
    A0A4X1TXH8, F1SDL3
    Related
    ENSSSCP00000009146.3, ENSSSCT00000009386.5
    Conserved Domains (2) summary
    cd06257
    Location:217 → 264
    DnaJ; DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, ...
    cd04119
    Location:17 → 184
    RJL; Rab GTPase family J-like (RabJ-like)

  2. XM_003481278.4 → XP_003481326.1  dnaJ homolog subfamily C member 27 isoform X2

    UniProtKB/TrEMBL
    A0A287ANI3, A0A4X1TY02
    Related
    ENSSSCP00000045627.1, ENSSSCT00000045473.3
    Conserved Domains (2) summary
    cd04119
    Location:17 → 176
    RJL; Rab GTPase family J-like (RabJ-like)
    smart00175
    Location:17 → 176
    RAB; Rab subfamily of small GTPases

RNA

  1. XR_002342820.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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