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tlx1 T cell leukemia homeobox 1 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100695693, updated on 8-Mar-2024

Summary

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Gene symbol
tlx1
Gene description
T cell leukemia homeobox 1
See related
Ensembl:ENSONIG00000013171
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Low expression observed in reference dataset See more
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG13
Exon count:
3
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG13 NC_031978.2 (31246997..31253335, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG13 NC_031978.1 (30767900..30771534)

Linkage Group LG13 - NC_031978.2Genomic Context describing neighboring genes Neighboring gene centrosomal protein 68 Neighboring gene succinate dehydrogenase complex assembly factor 4 Neighboring gene uncharacterized LOC112841942 Neighboring gene flocculation protein FLO11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in animal organ development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
T-cell leukemia homeobox protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031978.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    31246997..31253335 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013265006.3 → XP_013120460.1  T-cell leukemia homeobox protein 1 isoform X2

    UniProtKB/TrEMBL
    I3JBS3
    Conserved Domains (1) summary
    pfam00046
    Location:165 → 218
    Homeobox; Homeobox domain

  2. XM_003456686.5 → XP_003456734.1  T-cell leukemia homeobox protein 1 isoform X1

    UniProtKB/TrEMBL
    I3JBS3, I3K621
    Related
    ENSONIP00000016566.1, ENSONIT00000016581.2
    Conserved Domains (1) summary
    pfam00046
    Location:177 → 231
    Homeobox; Homeobox domain
Nucleotide Protein
Heading Accession and Version

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