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mrtfa myocardin related transcription factor A [ Anolis carolinensis (green anole) ]

Gene ID: 100556392, updated on 6-Jun-2024

Summary

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Gene symbol
mrtfa
Gene description
myocardin related transcription factor A
See related
Ensembl:ENSACAG00000005348
Gene type
protein coding
RefSeq status
MODEL
Organism
Anolis carolinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Dactyloidae; Anolis
Also known as
mkl1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current rAnoCar3.1.pri (GCF_035594765.1) 5 NC_085845.1 (170745807..170801128)
102 previous assembly AnoCar2.0 (GCF_000090745.1) 5 NC_014780.1 (25827597..25882796, complement)

Chromosome 5 - NC_085845.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134299151 Neighboring gene solute carrier family 25 member 17 Neighboring gene uncharacterized LOC134299150 Neighboring gene small G protein signaling modulator 3 Neighboring gene uncharacterized LOC134299152 Neighboring gene adenylosuccinate lyase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Branch lengths, support, and congruence: testing the phylogenomic approach with 20 nuclear loci in snakes. Wiens JJ, et al. Syst Biol, 2008 Jun. PMID 18570036

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in smooth muscle cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myocardin-related transcription factor A
Names
megakaryoblastic leukemia (translocation) 1
megakaryoblastic leukemia 1 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_035594765.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAnoCar3.1.pri

Genomic

  1. NC_085845.1 Reference rAnoCar3.1.pri

    Range
    170745807..170801128
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_062981003.1 → XP_062837073.1  myocardin-related transcription factor A isoform X2

    UniProtKB/TrEMBL
    G1KE16

  2. XM_016993711.2 → XP_016849200.1  myocardin-related transcription factor A isoform X1

    UniProtKB/TrEMBL
    G1KE16

  3. XM_016993712.2 → XP_016849201.1  myocardin-related transcription factor A isoform X4

    UniProtKB/TrEMBL
    G1KE16

  4. XM_008110734.3 → XP_008108941.1  myocardin-related transcription factor A isoform X3

    UniProtKB/TrEMBL
    G1KE16
    Conserved Domains (5) summary
    smart00707
    Location:85 → 110
    RPEL; Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2
    pfam02037
    Location:411 → 444
    SAP; SAP domain
    pfam07462
    Location:459 → 543
    MSP1_C; Merozoite surface protein 1 (MSP1) C-terminus
    pfam09903
    Location:596 → 640
    DUF2130; Uncharacterized protein conserved in bacteria (DUF2130)
    pfam16791
    Location:778 → 875
    Connexin40_C; Connexin 40 C-terminal domain
Nucleotide Protein
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