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NFXL1 nuclear transcription factor, X-box binding like 1 [ Sus scrofa (pig) ]

Gene ID: 100518499, updated on 8-Mar-2024

Summary

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Official Symbol
NFXL1provided by VGNC
Official Full Name
nuclear transcription factor, X-box binding like 1provided by VGNC
Primary source
VGNC:VGNC:90728
See related
Ensembl:ENSSSCG00000008816
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 1.9), kidney (RPKM 1.5) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See NFXL1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
25
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 8 NC_010450.4 (37812378..37875582, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 8 NC_010450.3 (39788607..39845909, complement)

Chromosome 8 - NC_010450.4Genomic Context describing neighboring genes Neighboring gene ATPase phospholipid transporting 10D (putative) Neighboring gene corin, serine peptidase Neighboring gene uncharacterized LOC102166909 Neighboring gene cyclic nucleotide gated channel subunit alpha 1 Neighboring gene NIPA like domain containing 1 Neighboring gene TXK tyrosine kinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
NF-X1-type zinc finger protein NFXL1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010450.4 Reference Sscrofa11.1 Primary Assembly

    Range
    37812378..37875582 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021100578.1 → XP_020956237.1  NF-X1-type zinc finger protein NFXL1 isoform X1

    UniProtKB/TrEMBL
    A0A287A523, A0A8D0W3A0
    Related
    ENSSSCP00000038891.2, ENSSSCT00000065602.3
    Conserved Domains (2) summary
    cd06008
    Location:420 → 468
    NF-X1-zinc-finger; Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger ...
    cd16697
    Location:163 → 226
    RING-CH-C4HC3_NFXL1; RING-CH finger, H2 subclass (C4HC3-type), found in nuclear transcription factor, X-box binding-like 1 (NFXL1) and similar proteins

  2. XM_021100583.1 → XP_020956242.1  NF-X1-type zinc finger protein NFXL1 isoform X4

    UniProtKB/TrEMBL
    A0A8D0NK12, A0A8D1WF39, F1S3S2
    Conserved Domains (2) summary
    cd06008
    Location:399 → 447
    NF-X1-zinc-finger; Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger ...
    cd16697
    Location:142 → 205
    RING-CH-C4HC3_NFXL1; RING-CH finger, H2 subclass (C4HC3-type), found in nuclear transcription factor, X-box binding-like 1 (NFXL1) and similar proteins

  3. XM_021100582.1 → XP_020956241.1  NF-X1-type zinc finger protein NFXL1 isoform X3

    UniProtKB/TrEMBL
    A0A8D0NK12, A0A8D1WF39, F1S3S2
    Conserved Domains (2) summary
    cd06008
    Location:400 → 448
    NF-X1-zinc-finger; Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger ...
    cd16697
    Location:143 → 206
    RING-CH-C4HC3_NFXL1; RING-CH finger, H2 subclass (C4HC3-type), found in nuclear transcription factor, X-box binding-like 1 (NFXL1) and similar proteins

  4. XM_021100581.1 → XP_020956240.1  NF-X1-type zinc finger protein NFXL1 isoform X2

    UniProtKB/TrEMBL
    A0A4X1UKE7, A0A8D0JIF0, A0A8D0U212
    Related
    ENSSSCP00000009397.4, ENSSSCT00000009646.4
    Conserved Domains (2) summary
    cd06008
    Location:419 → 467
    NF-X1-zinc-finger; Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger ...
    cd16697
    Location:162 → 225
    RING-CH-C4HC3_NFXL1; RING-CH finger, H2 subclass (C4HC3-type), found in nuclear transcription factor, X-box binding-like 1 (NFXL1) and similar proteins

  5. XM_021100580.1 → XP_020956239.1  NF-X1-type zinc finger protein NFXL1 isoform X1

    UniProtKB/TrEMBL
    A0A287A523, A0A8D0W3A0
    Conserved Domains (2) summary
    cd06008
    Location:420 → 468
    NF-X1-zinc-finger; Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger ...
    cd16697
    Location:163 → 226
    RING-CH-C4HC3_NFXL1; RING-CH finger, H2 subclass (C4HC3-type), found in nuclear transcription factor, X-box binding-like 1 (NFXL1) and similar proteins

  6. XM_021100584.1 → XP_020956243.1  NF-X1-type zinc finger protein NFXL1 isoform X5

    UniProtKB/TrEMBL
    A0A8D0NK12, A0A8D1WF39, F1S3S2
    Conserved Domains (2) summary
    cd06008
    Location:336 → 384
    NF-X1-zinc-finger; Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger ...
    cd16697
    Location:79 → 142
    RING-CH-C4HC3_NFXL1; RING-CH finger, H2 subclass (C4HC3-type), found in nuclear transcription factor, X-box binding-like 1 (NFXL1) and similar proteins
Nucleotide Protein
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