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ADAMTS19 ADAM metallopeptidase with thrombospondin type 1 motif 19 [ Sus scrofa (pig) ]

Gene ID: 100518181, updated on 17-Aug-2024

Summary

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Official Symbol
ADAMTS19provided by VGNC
Official Full Name
ADAM metallopeptidase with thrombospondin type 1 motif 19provided by VGNC
Primary source
VGNC:VGNC:96786
See related
Ensembl:ENSSSCG00000014259
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in lung (RPKM 1.6), ovary (RPKM 0.9) and 7 other tissues See more
Orthologs
human mouse all
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Genomic context

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See ADAMTS19 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
24
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (132145266..132413116)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (137454237..137675689)

Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S7 pseudogene Neighboring gene uncharacterized LOC102163451 Neighboring gene uncharacterized LOC110259473 Neighboring gene uncharacterized LOC106509556 Neighboring gene membrane integral NOTCH2 associated receptor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: A disintegrin and metalloproteinase with thrombospondin motifs 19
Names
A disintegrin and metalloproteinase with thrombospondin motifs 19

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

    Range
    132145266..132413116
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021084737.1 → XP_020940396.1  LOW QUALITY PROTEIN: A disintegrin and metalloproteinase with thrombospondin motifs 19

    UniProtKB/TrEMBL
    A0A4X1ULP0, A0A8D1DY92
    Related
    ENSSSCP00000015168.5, ENSSSCT00000015580.5
    Conserved Domains (5) summary
    smart00209
    Location:638 → 687
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:327 → 544
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam01562
    Location:161 → 275
    Pep_M12B_propep; Reprolysin family propeptide
    pfam05986
    Location:791 → 901
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam08686
    Location:1173 → 1197
    PLAC; PLAC (protease and lacunin) domain
Nucleotide Protein
Heading Accession and Version

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