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RPL38 ribosomal protein L38 [ Sus scrofa (pig) ]

Gene ID: 100516393, updated on 17-Aug-2024

Summary

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Official Symbol
RPL38provided by VGNC
Official Full Name
ribosomal protein L38provided by VGNC
Primary source
VGNC:VGNC:99036
See related
Ensembl:ENSSSCG00000017239
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 744.1), ovary (RPKM 648.5) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
5
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 12 NC_010454.4 (6884899..6889966, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 12 NC_010454.3 (6911975..6917043, complement)

Chromosome 12 - NC_010454.4Genomic Context describing neighboring genes Neighboring gene dynein axonemal intermediate chain 2 Neighboring gene tweety family member 2 Neighboring gene uncharacterized LOC110255973 Neighboring gene uncharacterized LOC110255909

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein-RNA complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
60S ribosomal protein L38

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010454.4 Reference Sscrofa11.1 Primary Assembly

    Range
    6884899..6889966 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021066688.1 → XP_020922347.1  60S ribosomal protein L38

    UniProtKB/TrEMBL
    A0A4X1VHG5, A0A4X1VLH7, A0A8D0KER0, F2Z568
    Related
    ENSSSCP00000042077.2, ENSSSCT00000049119.2
    Conserved Domains (1) summary
    pfam01781
    Location:2 → 68
    Ribosomal_L38e; Ribosomal L38e protein family

  2. XM_005668640.3 → XP_005668697.1  60S ribosomal protein L38

    See identical proteins and their annotated locations for XP_005668697.1

    UniProtKB/TrEMBL
    A0A4X1VHG5, A0A4X1VLH7, A0A8D0KER0, F2Z568
    Conserved Domains (1) summary
    pfam01781
    Location:2 → 68
    Ribosomal_L38e; Ribosomal L38e protein family

  3. XM_003357990.4 → XP_003358038.1  60S ribosomal protein L38

    See identical proteins and their annotated locations for XP_003358038.1

    UniProtKB/TrEMBL
    A0A4X1VHG5, A0A4X1VLH7, A0A8D0KER0, F2Z568
    Conserved Domains (1) summary
    pfam01781
    Location:2 → 68
    Ribosomal_L38e; Ribosomal L38e protein family
Nucleotide Protein
Heading Accession and Version

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