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SPDL1 spindle apparatus coiled-coil protein 1 [ Sus scrofa (pig) ]

Gene ID: 100510938, updated on 8-Mar-2024

Summary

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Official Symbol
SPDL1provided by VGNC
Official Full Name
spindle apparatus coiled-coil protein 1provided by VGNC
Primary source
VGNC:VGNC:93395
See related
Ensembl:ENSSSCG00000025965
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
CCDC99
Expression
Broad expression in ovary (RPKM 6.5), spleen (RPKM 2.3) and 5 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 16
Exon count:
12
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 16 NC_010458.4 (54276943..54303465, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 16 NC_010458.3 (58844321..58870836, complement)

Chromosome 16 - NC_010458.4Genomic Context describing neighboring genes Neighboring gene forkhead box I1 Neighboring gene dedicator of cytokinesis 2 Neighboring gene inhibitory synaptic factor family member 2B Neighboring gene uncharacterized LOC110257251 Neighboring gene 60S ribosomal protein L35 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables kinetochore binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in establishment of mitotic spindle orientation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic metaphase chromosome alignment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic spindle assembly checkpoint signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to kinetochore IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of outer kinetochore IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in spindle pole IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein Spindly
Names
coiled-coil domain containing 99

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010458.4 Reference Sscrofa11.1 Primary Assembly

    Range
    54276943..54303465 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003134063.5 → XP_003134111.2  protein Spindly isoform X2

    See identical proteins and their annotated locations for XP_003134111.2

    UniProtKB/TrEMBL
    A0A4X1U4Y5, A0A8D0JIV6, A0A8D0WC22, I3LS43
    Related
    ENSSSCP00000026934.1, ENSSSCT00000027418.3
    Conserved Domains (2) summary
    COG1196
    Location:155 → 457
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:7 → 248
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  2. XM_005672552.3 → XP_005672609.1  protein Spindly isoform X2

    See identical proteins and their annotated locations for XP_005672609.1

    UniProtKB/TrEMBL
    A0A4X1U4Y5, A0A8D0JIV6, A0A8D0WC22, I3LS43
    Conserved Domains (2) summary
    COG1196
    Location:155 → 457
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:7 → 248
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  3. XM_021076814.1 → XP_020932473.1  protein Spindly isoform X1

    UniProtKB/TrEMBL
    A0A8D1Q5G7, A0A8D1T6Q4
    Conserved Domains (1) summary
    cl25732
    Location:7 → 283
    SMC_N; RecF/RecN/SMC N terminal domain

  4. XM_021076815.1 → XP_020932474.1  protein Spindly isoform X1

    UniProtKB/TrEMBL
    A0A8D1Q5G7, A0A8D1T6Q4
    Conserved Domains (1) summary
    cl25732
    Location:7 → 283
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version

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