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CBR3-AS1 CBR3 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100506428, updated on 22-Jan-2023

Summary

Official Symbol
CBR3-AS1provided by HGNC
Official Full Name
CBR3 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:43664
See related
Ensembl:ENSG00000236830 AllianceGenome:HGNC:43664
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PlncRNA1; PlncRNA-1
Expression
Ubiquitous expression in prostate (RPKM 4.6), salivary gland (RPKM 3.1) and 25 other tissues See more
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Genomic context

See CBR3-AS1 in Genome Data Viewer
Location:
21q22.12
Exon count:
5
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (36131767..36156308, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (34514794..34539161, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (37504065..37528606, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene CBR1 antisense RNA 1 Neighboring gene carbonyl reductase 1 Neighboring gene uncharacterized LOC105369306 Neighboring gene MEMO1 pseudogene 1 Neighboring gene ribosomal protein S9 pseudogene 1 Neighboring gene carbonyl reductase 3 Neighboring gene DOP1 leucine zipper like protein B Neighboring gene uncharacterized LOC124905016 Neighboring gene ribosomal protein L3 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Other Names

  • CBR3 antisense RNA 1 (non-protein coding)
  • prostate cancer-up-regulated long noncoding RNA 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038892.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AL542398, AP000689, BI836686
    Related
    ENST00000413862.7
  2. NR_038893.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal exon, compared to variant 1.
    Source sequence(s)
    AP000689, BI836686
    Related
    ENST00000453159.6
  3. NR_038894.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) has an alternate 3' sequence, compared to variant 1.
    Source sequence(s)
    AP000689, BI836686
    Related
    ENST00000427491.3

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    36131767..36156308 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    34514794..34539161 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)