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HOTAIRM1 HOXA transcript antisense RNA, myeloid-specific 1 [ Homo sapiens (human) ]

Gene ID: 100506311, updated on 24-Nov-2020

Summary

Official Symbol
HOTAIRM1provided by HGNC
Official Full Name
HOXA transcript antisense RNA, myeloid-specific 1provided by HGNC
Primary source
HGNC:HGNC:37117
See related
Ensembl:ENSG00000233429
Gene type
ncRNA
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HOXA-AS1; HOXA1-AS1; NCRNA00179
Summary
This non-coding locus is located in the HOX gene cluster. Transcription of this locus is induced by retinoic acid, and transcripts likely function in regulation of myelopoiesis through transcriptional activation of several genes in the HOXA cluster, in addition to several beta-2 integrins. [provided by RefSeq, Jan 2013]
Expression
Broad expression in adrenal (RPKM 4.5), spleen (RPKM 4.0) and 19 other tissues See more
Orthologs

Genomic context

See HOTAIRM1 in Genome Data Viewer
Location:
7p15.2
Exon count:
3
Annotation release Status Assembly Chr Location
109.20201120 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (27096094..27100258)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (27135713..27139877)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene NHP2 ribonucleoprotein pseudogene 2 Neighboring gene Sharpr-MPRA regulatory region 2148 Neighboring gene homeobox A1 Neighboring gene homeobox A2 Neighboring gene homeobox A3 Neighboring gene HOXA cluster antisense RNA 2 Neighboring gene homeobox A4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Other Names

  • HOX antisense intergenic RNA myeloid 1
  • HOXA cluster antisense RNA 1 (non-protein coding)
  • HOXA transcript antisense RNA, myeloid-specific 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_033087.1 RefSeqGene

    Range
    5001..9165
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_038366.1 RNA Sequence

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AI123748, BC031342, GQ479958
  2. NR_038367.1 RNA Sequence

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) lacks an internal exon compared to variant 1.
    Source sequence(s)
    AI123748, GQ479958
    Related
    ENST00000434063.3

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20201120

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    27096094..27100258
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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