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Hotairm1 Hoxa transcript antisense RNA, myeloid-specific 1 [ Mus musculus (house mouse) ]

Gene ID: 105242658, updated on 4-Sep-2022

Summary

Official Symbol
Hotairm1provided by MGI
Official Full Name
Hoxa transcript antisense RNA, myeloid-specific 1provided by MGI
Primary source
MGI:MGI:3705155
See related
Ensembl:ENSMUSG00000087658 AllianceGenome:MGI:3705155
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm15051; Hoxaas1
Summary
Orthologous to human HOTAIRM1 (HOXA transcript antisense RNA, myeloid-specific 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in adrenal adult (RPKM 15.0), stomach adult (RPKM 8.3) and 17 other tissues See more
Orthologs
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Genomic context

See Hotairm1 in Genome Data Viewer
Location:
6 25.4 cM; 6 B3
Exon count:
2
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (52135504..52139000)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (52158524..52162020)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene ribosomal protein S8, pseudogene 3 Neighboring gene Hoxa transcript antisense RNA, myeloid-specific 2 Neighboring gene homeobox A1 Neighboring gene homeobox A2 Neighboring gene Hoxa cluster antisense RNA 2 Neighboring gene homeobox A3

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_131181.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC091106, AW456363, AW457279
    Related
    ENSMUST00000159006.2

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    52135504..52139000
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)