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FGD5-AS1 FGD5 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100505641, updated on 3-Dec-2022

Summary

Official Symbol
FGD5-AS1provided by HGNC
Official Full Name
FGD5 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40410
See related
Ensembl:ENSG00000225733 AllianceGenome:HGNC:40410
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in brain (RPKM 37.5), thyroid (RPKM 37.4) and 25 other tissues See more
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Genomic context

See FGD5-AS1 in Genome Data Viewer
Location:
3p25.1
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (14942779..14948441, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (14945229..14950891, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (14984286..14989948, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene FYVE, RhoGEF and PH domain containing 5 Neighboring gene uncharacterized LOC105376963 Neighboring gene Sharpr-MPRA regulatory region 15385 Neighboring gene nuclear receptor subfamily 2 group C member 2 Neighboring gene mitochondrial ribosomal protein S25 Neighboring gene rabenosyn, RAB effector

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Other Names

  • FGD5 antisense RNA 1 (non-protein coding)

Clone Names

  • FLJ31362, FLJ38960, AC090937.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046251.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC090937, AK096279, BC008609, DA993974
    Related
    ENST00000665449.1
  2. NR_046252.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate 5'-most exon, compared to variant 1.
    Source sequence(s)
    AC090937, BC039246, DA123583
    Related
    ENST00000424349.1
  3. NR_046253.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate 5'-most exon, compared to variant 1.
    Source sequence(s)
    AC090937, BC063441, DA123583
  4. NR_046254.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses an alternate 5'-most exon, compared to variant 1.
    Source sequence(s)
    AC090937, DA123583, DA836235
    Related
    ENST00000665738.1
  5. NR_046255.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) uses an alternate 5'-most exon, compared to variant 1.
    Source sequence(s)
    AC090937, BC056913

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    14942779..14948441 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    14945229..14950891 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)