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hip1 huntingtin interacting protein 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100496371, updated on 17-Aug-2024

Summary

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Official Symbol
hip1provided by Xenbase
Official Full Name
huntingtin interacting protein 1provided by Xenbase
Primary source
Xenbase:XB-GENE-983522
See related
Ensembl:ENSXETG00000005880
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
hip-1
Orthologs
human mouse all
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Genomic context

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See hip1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
33
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (48795021..48861630)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (44475049..44540439)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene RAB guanine nucleotide exchange factor (GEF) 1 Neighboring gene chemokine (C-C motif) ligand 5 Neighboring gene eosinophil peroxidase Neighboring gene cell death inducing DFFA like effector b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
  
enables clathrin binding IEA
Inferred from Electronic Annotation
more info
  
enables phospholipid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within endocytosis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
huntingtin-interacting protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    48795021..48861630
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004911728.3 → XP_004911785.1  huntingtin-interacting protein 1

    See identical proteins and their annotated locations for XP_004911785.1

    UniProtKB/TrEMBL
    A0A5S6MS35, A0A6I8QDF8, F6Y171
    Conserved Domains (4) summary
    smart00307
    Location:726 → 924
    ILWEQ; I/LWEQ domain
    COG1196
    Location:371 → 562
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam07651
    Location:7 → 272
    ANTH; ANTH domain
    pfam16515
    Location:455 → 530
    HIP1_clath_bdg; Clathrin-binding domain of Huntingtin-interacting protein 1

  2. XM_004911729.3 → XP_004911786.1  huntingtin-interacting protein 1

    See identical proteins and their annotated locations for XP_004911786.1

    UniProtKB/TrEMBL
    A0A5S6MS35, A0A6I8QDF8, F6Y171
    Related
    ENSXETP00000070763.2, ENSXETT00000097101.2
    Conserved Domains (4) summary
    smart00307
    Location:726 → 924
    ILWEQ; I/LWEQ domain
    COG1196
    Location:371 → 562
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam07651
    Location:7 → 272
    ANTH; ANTH domain
    pfam16515
    Location:455 → 530
    HIP1_clath_bdg; Clathrin-binding domain of Huntingtin-interacting protein 1

  3. XM_002933547.5 → XP_002933593.2  huntingtin-interacting protein 1

    See identical proteins and their annotated locations for XP_002933593.2

    UniProtKB/TrEMBL
    A0A5S6MS35, A0A6I8QDF8, F6Y171
    Related
    ENSXETP00000012962.5, ENSXETT00000012962.5
    Conserved Domains (4) summary
    smart00307
    Location:726 → 924
    ILWEQ; I/LWEQ domain
    COG1196
    Location:371 → 562
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam07651
    Location:7 → 272
    ANTH; ANTH domain
    pfam16515
    Location:455 → 530
    HIP1_clath_bdg; Clathrin-binding domain of Huntingtin-interacting protein 1

  4. XM_031896773.1 → XP_031752633.1  huntingtin-interacting protein 1

    UniProtKB/TrEMBL
    A0A5S6MS35, A0A6I8QDF8, F6Y171
    Conserved Domains (4) summary
    smart00307
    Location:726 → 924
    ILWEQ; I/LWEQ domain
    COG1196
    Location:371 → 562
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam07651
    Location:7 → 272
    ANTH; ANTH domain
    pfam16515
    Location:455 → 530
    HIP1_clath_bdg; Clathrin-binding domain of Huntingtin-interacting protein 1
Nucleotide Protein Strain
Heading Accession and Version

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