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smpd1 sphingomyelin phosphodiesterase 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100487433, updated on 17-Aug-2024

Summary

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Official Symbol
smpd1provided by Xenbase
Official Full Name
sphingomyelin phosphodiesterase 1provided by Xenbase
Primary source
Xenbase:XB-GENE-997694
See related
Ensembl:ENSXETG00000048357
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
asm; npd; asmase
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (179975097..179984220)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016684115.1 (72..7296)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene CCKBR cholecystokinin B receptor Neighboring gene olfactory receptor family 56 subfamily C member 1 Neighboring gene E3 ubiquitin-protein ligase TRIM7-like Neighboring gene amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65) Neighboring gene uncharacterized LOC101732473

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables hydrolase activity, acting on glycosyl bonds IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
sphingomyelin phosphodiesterase
Names
acid sphingomyelinase
sphingomyelin phosphodiesterase 1, acid lysosomal

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    179975097..179984220
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002943500.5 → XP_002943546.1  sphingomyelin phosphodiesterase

    UniProtKB/TrEMBL
    A0A1B8XW41
    Related
    ENSXETP00000112722.1, ENSXETT00000114871.1
    Conserved Domains (2) summary
    smart00741
    Location:48 → 121
    SapB; Saposin (B) Domains
    cd00842
    Location:162 → 454
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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