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lrfn1 leucine rich repeat and fibronectin type III domain containing 1, gene 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100487064, updated on 25-Apr-2024

Summary

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Official Symbol
lrfn1provided by Xenbase
Official Full Name
leucine rich repeat and fibronectin type III domain containing 1, gene 1provided by Xenbase
Primary source
Xenbase:XB-GENE-6045969
See related
Ensembl:ENSXETG00000005309
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
lrfn1.1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (81075466..81144477, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (59891419..59962143, complement)

Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene syncollin Neighboring gene U4 spliceosomal RNA Neighboring gene leucine rich repeat and fibronectin type III domain containing 1, gene 2 Neighboring gene uncharacterized LOC116406743 Neighboring gene uncharacterized LOC116407078

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in synapse IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
leucine-rich repeat and fibronectin type III domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    81075466..81144477 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018096917.2 → XP_017952406.1  leucine-rich repeat and fibronectin type III domain-containing protein 1

    UniProtKB/TrEMBL
    A0A803J3T0, F6PU11
    Related
    ENSXETP00000011619.4, ENSXETT00000011619.5
    Conserved Domains (6) summary
    smart00082
    Location:243 → 288
    LRRCT; Leucine rich repeat C-terminal domain
    sd00033
    Location:55 → 78
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00041
    Location:418 → 492
    fn3; Fibronectin type III domain
    cd00096
    Location:290 → 293
    Ig; Ig strand A [structural motif]
    cd21340
    Location:58 → 208
    PPP1R42; protein phosphatase 1 regulatory subunit 42
    cl11960
    Location:290 → 378
    Ig; Immunoglobulin domain

  2. XM_012969569.3 → XP_012825023.1  leucine-rich repeat and fibronectin type III domain-containing protein 1

    See identical proteins and their annotated locations for XP_012825023.1

    UniProtKB/TrEMBL
    A0A803J3T0, F6PU11
    Conserved Domains (6) summary
    smart00082
    Location:243 → 288
    LRRCT; Leucine rich repeat C-terminal domain
    sd00033
    Location:55 → 78
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00041
    Location:418 → 492
    fn3; Fibronectin type III domain
    cd00096
    Location:290 → 293
    Ig; Ig strand A [structural motif]
    cd21340
    Location:58 → 208
    PPP1R42; protein phosphatase 1 regulatory subunit 42
    cl11960
    Location:290 → 378
    Ig; Immunoglobulin domain

  3. XM_031891598.1 → XP_031747458.1  leucine-rich repeat and fibronectin type III domain-containing protein 1

    UniProtKB/TrEMBL
    A0A803J3T0, F6PU11
    Conserved Domains (6) summary
    smart00082
    Location:243 → 288
    LRRCT; Leucine rich repeat C-terminal domain
    sd00033
    Location:55 → 78
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00041
    Location:418 → 492
    fn3; Fibronectin type III domain
    cd00096
    Location:290 → 293
    Ig; Ig strand A [structural motif]
    cd21340
    Location:58 → 208
    PPP1R42; protein phosphatase 1 regulatory subunit 42
    cl11960
    Location:290 → 378
    Ig; Immunoglobulin domain

  4. XM_002940361.5 → XP_002940407.1  leucine-rich repeat and fibronectin type III domain-containing protein 1

    See identical proteins and their annotated locations for XP_002940407.1

    UniProtKB/TrEMBL
    A0A803J3T0, F6PU11
    Conserved Domains (6) summary
    smart00082
    Location:243 → 288
    LRRCT; Leucine rich repeat C-terminal domain
    sd00033
    Location:55 → 78
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00041
    Location:418 → 492
    fn3; Fibronectin type III domain
    cd00096
    Location:290 → 293
    Ig; Ig strand A [structural motif]
    cd21340
    Location:58 → 208
    PPP1R42; protein phosphatase 1 regulatory subunit 42
    cl11960
    Location:290 → 378
    Ig; Immunoglobulin domain
Nucleotide Protein Strain
Heading Accession and Version

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